Results 31 to 40 of about 45,343 (323)

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

open access: yesbioRxiv, 2019
Thanks to the development of high-throughput sequencing technologies, target enrichment sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routinely inferring phylogenetic relationships from thousands of genomic markers. Recently, it has
R. Allio   +5 more
semanticscholar   +1 more source

Assembling the Tree of Life in Europe (AToLE) [PDF]

open access: yes, 2009
A network of scientists under the umbrella of 'Assembling the Tree of Life in Europe (AToLE)' seeks funding under the FP7-Theme: Cooperation - Environment (including Climate Change and Biodiversity Conservation) programme of the European ...
Alexandre Hassanin   +11 more
core   +2 more sources

GToTree: a user-friendly workflow for phylogenomics

open access: yesbioRxiv, 2019
Summary Genome-level evolutionary inference (i.e., phylogenomics) is becoming an increasingly essential step in many biologists’ work - such as in the characterization of newly recovered genomes, or in leveraging available reference genomes to guide ...
Michael D. Lee
semanticscholar   +1 more source

Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics

open access: yesFungal diversity, 2021
Lichens are symbiotic associations resulting from interactions among fungi (primary and secondary mycobionts), algae and/or cyanobacteria (primary and secondary photobionts), and specific elements of the bacterial microbiome associated with the lichen ...
R. Lücking   +2 more
semanticscholar   +1 more source

Insect phylogenomics [PDF]

open access: yesInsect Molecular Biology, 2015
AbstractPhylogenomics, the integration of phylogenetics with genome data, has emerged as a powerful approach to study the evolution and systematics of species. Recently, several studies employing phylogenomic tools have provided better insights into insect evolution.
openaire   +2 more sources

Phylogenomic analyses data of the avian phylogenomics project [PDF]

open access: yesGigascience, 2015
Abstract Background Determining the evolutionary relationships among the major lineages of extant birds has been one of the biggest challenges in systematic biology. To address this challenge, we assembled or collected the genomes of 48 avian species spanning most orders of birds, including all ...
Jarvis, Erich   +26 more
openaire   +8 more sources

Broadly sampled orthologous groups of eukaryotic proteins for the phylogenetic study of plastid-bearing lineages

open access: yesBMC Research Notes, 2021
Objectives Identifying orthology relationships among sequences is essential to understand evolution, diversity of life and ancestry among organisms.
Mick Van Vlierberghe   +2 more
doaj   +1 more source

A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae. [PDF]

open access: yes, 2014
UnlabelledPremise of the studyThe Compositae (Asteraceae) are a large and diverse family of plants, and the most comprehensive phylogeny to date is a meta-tree based on 10 chloroplast loci that has several major unresolved nodes.
Burke, John M   +8 more
core   +2 more sources

Next-generation phylogenomics [PDF]

open access: yesBiology Direct, 2013
Thanks to advances in next-generation technologies, genome sequences are now being generated at breadth (e.g. across environments) and depth (thousands of closely related strains, individuals or samples) unimaginable only a few years ago. Phylogenomics--the study of evolutionary relationships based on comparative analysis of genome-scale data--has so ...
Chan, Cheong Xin, Ragan, Mark A.
openaire   +4 more sources

The mitochondrial genome of an Endangered freshwater snail Koreoleptoxis nodifila (Caenogastropoda: Semisulcospiridae) from South Korea

open access: yesMitochondrial DNA. Part B. Resources, 2021
The mitochondrial genome of the Endangered freshwater snail Koreoleptoxis nodifila (Caenogastropoda: Semisulcospiridae) from South Korea is determined and characterized in detail. It is 15,737 bp in length being composed of 13 protein-coding genes (PCGs),
Eun Hwa Choi, Na Rae Choi, Ui Wook Hwang
doaj   +1 more source

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