Results 111 to 120 of about 82,503 (224)

Whole genome sequencing of historical specimens from the world's largest fungal collection yields high‐quality assemblies

New Phytologist, EarlyView.
Summary High‐throughput molecular studies of museum specimens (museomics) have great potential in biodiversity research, but fungal historical collections have scarcely been examined, leading to no comprehensive methodological assessments. Here we present a whole genome sequencing (WGS) project conducted at the Fungarium of the Royal Botanic Gardens ...
Torda Varga, Roseina Woods, Frances Pitsillides, Rowena Hill, Alona Yu Biketova, Theo Llewellyn, Brandon J. P. Shaw, Emily Hodgson, Brigid Wong, Jasmine Le, Josepha Becker, Alexander J. Bradshaw, Seth L. E. Blake, Clementine Geeves, Quentin Levicky, Lottie Goodman, Ruben L. Mole, Sidney L. Reed, M. Carly Lin, Emily Read, Keenan Harris, Raquel Pino‐Bodas, László G. Nagy, Anna Bazzicalupo, Ester Gaya   +24 more
wiley   +1 more source

Ensemble-Based Refinement of Landmark Annotations for DNA Ploidy Analysis in Digital Pathology

Applied Sciences
Reliable evaluation of image segmentation algorithms in digital pathology depends on high-quality annotation datasets. Landmark-type annotations, essential for cell-counting analyses, are often limited in quality or quantity for segmentation benchmarking,
Viktor Zoltán Jónás, Dániel Küttel, Béla Molnár, Miklós Kozlovszky   +3 more
doaj   +1 more source

Efficient haploid production on 'Wilking' mandarin by induced gynogenesis [PDF]

, 2015
Seedlessness is a major criterion for the citrus fresh fruit market. Therefore, triploid breeding appears very promising for the selection of new citrus cultivars.
Froelicher, Yann, Jedidi Néji, Emna, Kamiri, Mourad, Ollitrault, Patrick, Poullet, Thibaut   +4 more
core  

The 3D genome of Gigaspora margarita unveils stable chromatin and nucleolar organization and symbiont‐dependent genome dynamics

New Phytologist, EarlyView.
Summary Arbuscular mycorrhizal fungi (AMF) are widespread plant symbionts that enhance nutrient acquisition and influence ecosystem productivity. Previous chromosome‐level assemblies of the model species Rhizophagus irregularis revealed a two‐compartment genome architecture (active A and repressed B chromatin compartments), yet its conservation across ...
Ken Mugambi, Jordana Oliveira, Franco Magurno, Alessandra Salvioli di Fossalunga, Mara Novero, Luisa Lanfranco, Stefano Ghignone, Gökalp Yildirir, Yan Wang, Paola Bonfante, Nicolas Corradi   +10 more
wiley   +1 more source

C4 photosynthetic anatomy is associated with higher leaf hydraulic conductance and capacitance in Alloteropsis semialata

New Phytologist, EarlyView.
Bulk leaf capacitance (Cbulk) in relation to bundle sheath area (BSA) and leaf dimensions in Alloteropsis semialata plants differing in photosynthetic type (C3, C3–C4 or C4) and ploidy level (2x, 6x or 12x). Summary The evolution of C4 photosynthesis requires biochemical innovations to be coordinated with anatomical modifications.
Yanmin Zhou, Luke T. Dunning, Hui Liu, Colin P. Osborne   +3 more
wiley   +1 more source

PlantCTCIP: Chromatin Interaction Prediction Using Convolutional Neural Network and Transformer in Plants

Plant Biotechnology Journal, EarlyView.
ABSTRACT Chromatin interactions establish spatial proximity between distant regulatory elements and their target genes, significantly influencing gene expression, and phenotypic traits. In this study, we present a plant chromatin interaction prediction model called PlantCTCIP based on Convolutional Neural Networks and Transformer.
Zhenye Wang, Siyu Zhou, Ze Guo, Zilan Ning, Jiaqi Cai, Ran Zhao, Ao Xie, Quan Li, Jiangling Zhang, Yongsheng Zhao, Peizhang Li, Haiping Si, Jianbing Yan, Yong Peng, Jianxiao Liu   +14 more
wiley   +1 more source

Exploring the intratumoral heterogeneity of DNA ploidy in prostate cancer

Cancer Reports
Background Prostate cancer is morphologically and molecularly heterogeneous. Genomic heterogeneity might be mirrored by variability in DNA ploidy. Aneuploidy is a hallmark of genomic instability and associated with tumor aggressiveness.
Tatjana Vlajnic, David C. Müller, Christian Ruiz, René Schönegg, Hans‐Helge Seifert, George N. Thalmann, Tobias Zellweger, Clémentine Le Magnen, Cyrill A. Rentsch, Lukas Bubendorf   +9 more
doaj   +1 more source

Chromosome‐Level Genome Assembly of the Allotetraploid Gynostemma pentaphyllum Provides Novel Insights Into the Biosynthesis of Ginsenoside and Gypenoside LVI

Plant Biotechnology Journal, EarlyView.
ABSTRACT Gynostemma pentaphyllum, a herb used in tea and traditional Chinese medicine, shows geographic variation in its production of valuable dammarane‐type ginsenosides and gypenoside LVI between populations from Suining (SN) and Nanning (NN). To elucidate the mechanisms underlying this differential metabolite accumulation, a chromosome‐level genome
Peina Zhou, Si‐Jie Liu, Lijin Huang, Yingping Wang, Xinyu Jiang, Wang Dong, Jianfeng Gong, Long Wang, Yuyin Zhao, Huiying Wang, Ping Li, Jia‐Yu Xue, Xu Lu   +12 more
wiley   +1 more source

DETERMINATION OF THE ORIGIN OF REGENERATED FLAX PLANTS IN ANTHER CULTURE

Вавиловский журнал генетики и селекции, 2014
The possibility to diagnose the ploidy of cells producing regenerated plants in vitro in anther culture has been studied. It is shown by the example of oil flax that population analysis of regenerated plants for segregation on the basis of a marker trait
A. I. Soroka, V. A. Lyakh
doaj  

Exceptional Uptake, Limited Protein Expression: Liver Macrophages Lost in Translation of Synthetic mRNA

Advanced Science
Most gene therapies exert their actions via manipulation of hepatocytes (parenchymal cells) and the reasons behind the suboptimal performance of synthetic mRNA in non‐parenchymal cells (NPC) such as Kupffer cells (KC), and liver macrophages, remain ...
Cheng Lin, Adrian Kuzmanović, Nan Wang, Liangliang Liao, Sabrina Ernst, Christian Penners, Alexander Jans, Thomas Hammoor, Petra Bumnuri Stach, Mona Peltzer, Ines Volkert, Elisabeth Zechendorf, Reham Hassan, Maiju Myllys, Christian Liedtke, Andreas Herrmann, Gurudas Chakraborty, Christian Trautwein, Jan Hengstler, Gerhard Müller‐Newen, Junqing Wang, Ahmed Ghallab, Matthias Bartneck   +22 more
doaj   +1 more source