Results 11 to 20 of about 8,031,804 (248)
Population Genomics for Insect Conservation
Annual Review of Animal Biosciences, 2023 Insects constitute vital components of ecosystems. There is alarming evidence for global declines in insect species diversity, abundance, and biomass caused by anthropogenic drivers such as habitat degradation or loss, agricultural practices, climate change, and environmental pollution.Webster, Matthew Thomas, Beaurepaire, Alexis, Neumann, Peter, Stolle, Eckart +3 moreopenaire +4 more sourcesPopulation genomics of post-glacial western Eurasia
bioRxiv, 2023 Western Eurasia witnessed several large-scale human migrations during the Holocene1–5. To investigate the cross-continental impacts we shotgun-sequenced 317 primarily Mesolithic and Neolithic genomes from across Northern and Western Eurasia.M. Allentoft, M. Sikora, Alba Refoyo-Martínez, Evan K. Irving-Pease, A. Fischer, William Barrie, A. Ingason, Jesper T. Stenderup, K. Sjögren, A. Pearson, Bárbara Sousa da Mota, Bettina Schulz Paulsson, Alma Halgren, R. Macleod, Marie Louise Schjellerup Jørkov, F. Demeter, L. Sørensen, P. Nielsen, R. Henriksen, T. Vimala, Hugh McColl, A. Margaryan, Melissa Ilardo, Andrew H. Vaughn, M. Mortensen, A. Nielsen, M. Hede, N. Johannsen, P. Rasmussen, L. Vinner, Gabriel Renaud, A. Stern, Theis Zetner Trolle Jensen, G. Scorrano, H. Schroeder, Per Lysdahl, A. Ramsøe, A. Skorobogatov, A. Schork, A. Rosengren, A. Ruter, A. Outram, A. Timoshenko, A. Buzhilova, A. Coppa, A. Zubova, A. M. Silva, A. Hansen, A. Gromov, A. Logvin, A. B. Gotfredsen, B. H. Nielsen, Borja González-Rabanal, C. Lalueza-Fox, Catriona McKenzie, Charleen Gaunitz, C. Blasco, Corina Liesau, C. Martínez-Labarga, D. Pozdnyakov, David Cuenca-Solana, D. Lordkipanidze, Dmitri En’shin, Domingo C. Salazar-García, T. Price, D. Borić, Elena Kostyleva, E. Veselovskaya, E. Usmanova, E. Cappellini, E. Petersen, Esben Kannegaard, F. Radina, F. E. Yediay, H. Duday, Igor Gutiérrez-Zugasti, I. Merts, I. Potekhina, I. Shevnina, Isin Altinkaya, J. Guilaine, Jesper Hansen, J. A. Aura Tortosa, J. Zilhão, J. Vega, K. Pedersen, Krzysztof Tunia, Lei Zhao, L. N. Mylnikova, Lars-Åke Larsson, Laure Metz, L. Yepiskoposyan, L. Pedersen, L. Sarti, L. Orlando, L. Slimak, L. Klassen, M. Blank, M. González-Morales, M. Silvestrini, Maria Vretemark, M. S. Nesterova, M. Rykun, M. Rolfo, M. Szmyt, M. Przybyła, Mauro Calattini, M. Sablin, M. Dobisíková, M. Meldgaard, Morten Johansen, Natalia Berezina, N. Card, Nikolai A. Saveliev, O. Poshekhonova, O. Rickards, O. Lozovskaya, O. Gábor, Otto Uldum, P. Aurino, P. Kosintsev, P. Courtaud, P. Ríos, P. Mortensen, Per Lotz, P. Persson, P. Bangsgaard, Peter de Barros Damgaard, P. V. Petersen, P. Martinez, P. Włodarczak, Roman V. Smolyaninov, Rikke Maring, Roberto Menduiña, R. Badalyan, R. Iversen, Ruslan Turin, S. Vasilyev, Sidsel Wåhlin, S. Borutskaya, S. Skochina, Søren A. Sørensen, S. Andersen, T. Jørgensen, Y. Serikov, V. Molodin, V. Smrcka, Victor Merz, Vivek Appadurai, V. Moiseyev, Yvonne Magnusson, K. Kjær, N. Lynnerup, D. Lawson, Peter H. Sudmant, Simon Rasmussen, T. Korneliussen, R. Durbin, R. Nielsen, O. Delaneau, T. Werge, F. Racimo, K. Kristiansen, E. Willerslev +163 moresemanticscholar +1 more sourceOrigin Matters: Using a Local Reference Genome Improves Measures in Population Genomics
bioRxiv, 2023 Genome-level sequencing enables us to ask fundamental questions about the genetic basis of adaptation, population structure, and epigenetic mechanisms, but usually requires a suitable reference genome for mapping population-level re-sequencing data.Doko-Miles J. Thorburn, Kostas Sagonas, Mahesh Binzer-Panchal, Frédéric J. J. Chain, P. Feulner, E. Bornberg-Bauer, T. Reusch, Irene E Samonte-Padilla, M. Milinski, T. Lenz, C. Eizaguirre +10 moresemanticscholar +1 more sourcePlant genome resequencing and population genomics: current status and future prospects.
Molecular Plant, 2023 Advances in DNA sequencing technology have sparked a genomics revolution, driving breakthroughs in plant genetics and crop breeding. Recently, the focus has shifted from cataloging genetic diversity in plants to exploring their functional significance ...Bo Song, Weidong Ning, Di Wei, Mengyun Jiang, Kun Zhu, Xingwei Wang, D. Edwards, D. Odeny, Shifeng Cheng +8 moresemanticscholar +1 more sourceA Fast, Reproducible, High-throughput Variant Calling Workflow for Population Genomics
Molecular biology and evolution, 2023 The increasing availability of genomic resequencing data sets and high-quality reference genomes across the tree of life present exciting opportunities for comparative population genomic studies.Cade Mirchandani, A. J. Shultz, G. W. Thomas, Sara J. Smith, Mara Baylis, Brian Arnold, Russ Corbett-Detig, Erik D. Enbody, Timothy B Sackton +8 moresemanticscholar +1 more sourcePopulation genomics confirms acquisition of drug-resistant Aspergillus fumigatus infection by humans from the environment
Nature Microbiology, 2022 Infections caused by the fungal pathogen Aspergillus fumigatus are increasingly resistant to first-line azole antifungal drugs. However, despite its clinical importance, little is known about how susceptible patients acquire infection from drug-resistant J. Rhodes, A. Abdolrasouli, Katie Dunne, Thomas R. Sewell, Yu-yun Zhang, Eloise Ballard, A. Brackin, N. van Rhijn, H. Chown, Alexandra Tsitsopoulou, R. Posso, S. Chotirmall, N. McElvaney, P. Murphy, A. F. Talento, J. Renwick, P. Dyer, A. Székely, P. Bowyer, M. Bromley, Elizabeth M. Johnson, P. Lewis White, A. Warris, R. Barton, S. Schelenz, T. Rogers, D. Armstrong-James, M. Fisher +27 moresemanticscholar +1 more sourceRecommendations for improving statistical inference in population genomics
bioRxiv, 2021 The field of population genomics has grown rapidly in response to the recent advent of affordable, large-scale sequencing technologies. As opposed to the situation during the majority of the 20th century, in which the development of theoretical and ...Parul Johri, C. Aquadro, M. Beaumont, B. Charlesworth, L. Excoffier, A. Eyre-Walker, P. Keightley, Michael Lynch, G. McVean, B. Payseur, Susanne P. Pfeifer, W. Stephan, J. Jensen +12 moresemanticscholar +1 more sourcePopulation genomics of the critically endangered kākāpō
Cell Genomics, 2021 Summary The kākāpō is a flightless parrot endemic to New Zealand. Once common in the archipelago, only 201 individuals remain today, most of them descending from an isolated island population.N. Dussex, Tom van der Valk, Hernán E. Morales, C. Wheat, D. Díez-del-Molino, Johanna von Seth, Yasmin Foster, V. Kutschera, K. Guschanski, A. Rhie, A. Phillippy, J. Korlach, K. Howe, W. Chow, S. Pelan, Joanna D. Mendes Damas, H. Lewin, A. Hastie, G. Formenti, O. Fedrigo, J. Guhlin, T. Harrop, Marissa F. Le Lec, P. Dearden, Leanne Haggerty, Fergal J. Martin, V. Kodali, F. Thibaud-Nissen, D. Iorns, M. Knapp, N. Gemmell, F. Robertson, R. Moorhouse, Ali Digby, D. Eason, Deidre Vercoe, Jason T. Howard, E. Jarvis, B. Robertson, L. Dalén +39 moresemanticscholar +1 more source
