Results 11 to 20 of about 4,646,061 (279)
Mining Protein Databases using Machine Learning Techniques
Journal of Integrative Bioinformatics, 2008 With a large amount of information relating to proteins accumulating in databases widely available online, it is of interest to apply machine learning techniques that, by extracting underlying statistical regularities in the data, make predictions about ...
Camargo Renata da Silva +1 more
doaj +2 more sources
Pattern matching and pattern discovery algorithms for protein topologies [PDF]
, 2001 We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgraph isomorphism and finding maximal common subgraphs in a restricted ...
Viksna, J +3 more
core +7 more sources
Protein-Protein Interaction Databases
, 2015 Years of meticulous curation of scientific literature and increasingly reliable computational predictions have resulted in creation of vast databases of protein interaction data.
Damian Szklarczyk +3 more
core +4 more sources
Domain discovery method for topological profile searches in protein structures [PDF]
, 2004 We describe a method for automated domain discovery for topological profile searches in protein structures. The method is used in a system TOPStructure for fast prediction of CATH classification for protein structures (given as PDB files).
Viksna, J, Gilbert, D, Torrance, G
core +6 more sources
Multi-class protein fold classification using a new ensemble machine learning approach. [PDF]
, 2003 Protein structure classification represents an important process in understanding the associations between sequence and structure as well as possible functional and evolutionary relationships.
Deville, Y, Gilbert, D, Tan, A
core +6 more sources
The Landscape of Virus-Host Protein–Protein Interaction Databases
Frontiers in Microbiology, 2022 Knowledge of virus-host interactomes has advanced exponentially in the last decade by the use of high-throughput screening technologies to obtain a more comprehensive landscape of virus-host protein–protein interactions.
Gabriel Valiente
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The Halophile Protein Database [PDF]
Database, 2014 Halophilic archaea/bacteria adapt to different salt concentration, namely extreme, moderate and low. These type of adaptations may occur as a result of modification of protein structure and other changes in different cell organelles. Thus proteins may play an important role in the adaptation of halophilic archaea/bacteria to saline conditions.
Naveen Sharma +6 more
openaire +3 more sources
The Protein Mutant Database [PDF]
Nucleic Acids Research, 1999 Currently the protein mutant database (PMD) contains over 81 000 mutants, including artificial as well as natural mutants of various proteins extracted from about 10 000 articles. We recently developed a powerful viewing and retrieving system (http://pmd.ddbj.nig.ac.jp), which is integrated with the sequence and tertiary structure databases. The system
Takeshi Kawabata +2 more
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Protein Databases on the Internet [PDF]
Current Protocols in Molecular Biology, 2000 AbstractProtein databases have become a crucial part of modern biology. Huge amounts of data for protein structures, functions, and particularly sequences are being generated. Searching databases is often the first step in the study of a new protein. Comparison between proteins and between protein families in databases provides information about the ...
Dong, Xu, Ying, Xu
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Virus Pop—Expanding Viral Databases by Protein Sequence Simulation
Viruses, 2023 The improvement of our knowledge of the virosphere, which includes unknown viruses, is a key area in virology. Metagenomics tools, which perform taxonomic assignation from high throughput sequencing datasets, are generally evaluated with datasets derived
Julia Kende +6 more
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