Results 41 to 50 of about 1,631,952 (291)

Continuum Secondary Structure Captures Protein Flexibility [PDF]

Structure, 2002
The DSSP program assigns protein secondary structure to one of eight states. This discrete assignment cannot describe the continuum of thermal fluctuations. Hence, a continuous assignment is proposed. Technically, the continuum results from averaging over ten discrete DSSP assignments with different hydrogen bond thresholds.
Andersen, Claus A.F., Palmer, Arthur G., Brunak, Søren, Rost, Burkhard   +3 more
openaire   +2 more sources

Combining Deep Neural Networks for Protein Secondary Structure Prediction

IEEE Access, 2020
By combining convolutional neural networks (CNN) and long short term memory networks (LSTM) into the learning structure, this paper presents a supervised learning method called combining deep neural networks (CDNN) for protein secondary structure ...
Shusen Zhou, Hailin Zou, Chanjuan Liu, Mujun Zang, Tong Liu   +4 more
doaj   +1 more source

Functional Properties of Protein Hydrolyzate from Ribbon Fish (Lepturacanthus Savala) as Prepared by Enzymatic hydrolysis

International Journal of Food Properties, 2022
Fish protein hydrolyzates (FPH) are breakdown products of hydrolysis and are gaining importance in the field of nutraceuticals and functional foods due to their bioactive properties, high nutritional value, solubility, and digestibility. This study aimed
Undiganalu Gangadharappa Yathisha, Sneha Vaidya, Mamatha Bangera Sheshappa   +2 more
doaj   +1 more source

Recoverable One-dimensional Encoding of Three-dimensional Protein Structures

, 2005
Protein one-dimensional (1D) structures such as secondary structure and contact number provide intuitive pictures to understand how the native three-dimensional (3D) structure of a protein is encoded in the amino acid sequence.
A. R. Kinjo, Berman, Havel, K. Nishikawa, Kabsch, Kinjo, Nakai, Plaxco, Porto, Vendruscolo, Wang   +10 more
core   +2 more sources

Identification of a protein encoded in the EB-viral open reading frame BMRF2 [PDF]

, 1992
Using monospecific rabbit sera against a peptide derived from a potential antigenic region of the Epstein-Barr viral amino acid sequence encoded in the open reading frame BMRF2 we could identify a protein-complex of 53/55 kDa in chemically induced B95-8,
A. v. Brunn, B Böttinger, E Tschachler, G Myers, GJ Clements, GJ LaRosa, H Takahashi, H Takahashi, H Takahashi, H. Fließbach, H. Wolf, HK Lyerly, HK Lyerly, J Goudsmit, J Goudsmit, JE Gregersen, K Javaherian, K Javaherian, LA Lasky, M Clerici, M Clerici, M. Niedrig, NL Haigwood, P Simmonds, PJ Durda, PW Berman, R Wagner, R. Wagner, RA Neurath, RH Meloen, S Modrow, S Modrow, SD Putney, Susanne Modrow, T Hattori, TJ Palker, Traudel Böltz, Y Devash   +37 more
core   +2 more sources

SSEP: secondary structural elements of proteins [PDF]

Nucleic Acids Research, 2003
SSEP is a comprehensive resource for accessing information related to the secondary structural elements present in the 25 and 90% non-redundant protein chains. The database contains 1771 protein chains from 1670 protein structures and 6182 protein chains from 5425 protein structures in 25 and 90% non-redundant protein chains, respectively.
Shanthi, V, Selvarani, P, Kumar, Kiran Ch, Mohire, CS, Sekar, K   +4 more
openaire   +2 more sources

Why Do Proteins Look Like Proteins?

, 1996
Protein structures in nature often exhibit a high degree of regularity (secondary structures, tertiary symmetries, etc.) absent in random compact conformations.
Helling, Robert, Li, Hao, Tang, Chao, Wingreen, Ned   +3 more
core   +1 more source

DichroMatch: a website for similarity searching of circular dichroism spectra [PDF]

, 2012
Circular dichroism (CD) spectroscopy is a widely used method for examining the structure, folding and conformational changes of proteins. A new online CD analysis server (DichroMatch) has been developed for identifying proteins with similar spectral ...
Abdul-Gader, B. A. Wallace, Berman, D. P. Klose, Hennessey, Kabsch, Lees, Lees, Lees, Mao, Miles, Miles, Miles, Robert W. Janes, Stone, Wallace, Wallace, Whitmore, Whitmore, Whitmore, Whitmore   +20 more
core   +1 more source

Improving protein fold recognition using the amalgamation of evolutionary-based and structural-based information [PDF]

, 2014
Deciphering three dimensional structure of a protein sequence is a challenging task in biological science. Protein fold recognition and protein secondary structure prediction are transitional steps in identifying the three dimensional structure of a ...
Dehzangi, A., Lyons, J., Paliwal, K.K., Sharma, Alokanand   +3 more
core   +1 more source

Fourier Analysis of Conservation Patterns in Protein Secondary Structure

Computational and Structural Biotechnology Journal, 2017
Residue conservation is a common observation in alignments of protein families, underscoring positions important in protein structure and function. Though many methods measure the level of conservation of particular residue positions, currently we do not
Ashok Palaniappan, Eric Jakobsson
doaj   +1 more source