GroEL-Proteotyping of Bacterial Communities Using Tandem Mass Spectrometry [PDF]
International Journal of Molecular Sciences, 2023 Profiling bacterial populations in mixed communities is a common task in microbiology. Sequencing of 16S small subunit ribosomal-RNA (16S rRNA) gene amplicons is a widely accepted and functional approach but relies on amplification primers and cannot ...
Lorenz Adrian +2 more
exaly +3 more sources
Exploring Andean High-Altitude Lake Extremophiles Through Advanced Proteotyping [PDF]
Journal of Proteome ResearchQuickly identifying and characterizing isolates from extreme environments is currently challenging while very important to explore the Earth′s biodiversity. As these isolates may, in principle, be distantly related to known species, techniques are needed
Roberto Godoy, Jean Armengaud, Diana Boy
exaly +8 more sources
Proteotyping to establish gene origin within reassortant influenza viruses.
PLoS ONE, 2011 The application of a rapid and direct proteotyping approach with which to identify the gene origin of viral antigens in a reassortant influenza strain is demonstrated.
Ji-won Ha +2 more
doaj +5 more sources
Differentiation of Campylobacter fetus Subspecies by Proteotyping [PDF]
European Journal of Microbiology and Immunology, 2019 Campylobacter fetus is a causative agent of intestinal illness and, occasionally, severe systemic infections and meningitis. C. fetus currently comprises three subspecies: C. fetus subspecies fetus (Cff), C.
Zautner, Andreas E. +19 more
core +7 more sources
Frontiers in Microbiology, 2019 Clostridioides difficile, a Gram-positive spore-forming bacterium, is the leading cause of nosocomial diarrhea worldwide and therefore a substantial burden to the healthcare system.
Matthias F. Emele +16 more
doaj +2 more sources
Mix24X, A Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples [PDF]
International Journal of Molecular Sciences, 2023 International audienceCorrect identification of the microorganisms present in a complex sample is a crucial issue. Proteotyping based on tandem mass spectrometry can help establish an inventory of organisms present in a sample.
Béatrice M Alpha-Bazin +2 more
exaly +3 more sources
Label-Free Multiplex Proteotyping of Microbial Isolates
Analytical Chemistry, 2023 To meet clinical diagnostic needs and for general microbiological screening, it is essential to be able to accurately and rapidly identify any microorganisms from complex microbiota.
Jean Armengaud (16857) +7 more
core +5 more sources
Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics. [PDF]
PLoS ONE, 2018 A range of methodologies may be used for analyzing bacteria, depending on the purpose and the level of resolution needed. The capability for recognition of species distinctions within the complex spectrum of bacterial diversity is necessary for progress ...
Roger Karlsson +10 more
doaj +4 more sources
Revealing taxonomy, activity, and substrate assimilation in mixed bacterial communities by GroEL-proteotyping-based stable isotope probing [PDF]
iScienceSummary: Protein-based stable isotope probing (protein-SIP) can link microbial taxa to substrate assimilation. Traditionally, protein-SIP requires a sample-specific metagenome-derived database for samples with unknown composition. Here, we describe GroEL-
Simon Klaes +4 more
doaj +2 more sources
Taxonomical composition and functional analysis of biofilms sampled from a nuclear storage pool [PDF]
Frontiers in Microbiology, 2023 Sampling small amounts of biofilm from harsh environments such as the biofilm present on the walls of a radioactive material storage pool offers few analytical options if taxonomic characterization and estimation of the different biomass contributions ...
Olivier Pible +5 more
doaj +2 more sources