Results 31 to 40 of about 5,571,829 (332)
GigaScience, 2022 Background The domestic sheep (Ovis aries) is an important agricultural species raised for meat, wool, and milk across the world. A high-quality reference genome for this species enhances the ability to discover genetic mechanisms influencing biological ...
K. Davenport +10 more
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Nature Communications, 2020 Whole-genome sequencing (WGS) can support drug resistance surveillance, but is rare in low- and middle-income countries. Here, the authors integrate WGS within the national antimicrobial resistance surveillance program in the Philippines and conduct a ...
Silvia Argimón +23 more
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Benchmark study for evaluating the quality of reference genomes and gene annotations in 114 species
Frontiers in Veterinary Science, 2023 IntroductionFor reference genomes and gene annotations are key materials that can determine the limits of the molecular biology research of a species; however, systematic research on their quality assessment remains insufficient.MethodsWe collected ...
Sinwoo Park +7 more
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A novel canine reference genome resolves genomic architecture and uncovers transcript complexity
Communications Biology, 2021 We present GSD_1.0, a high-quality domestic dog reference genome with chromosome length scaffolds and contiguity increased 55-fold over CanFam3.1. Annotation with generated and existing long and short read RNA-seq, miRNA-seq and ATAC-seq, revealed that ...
Chao Wang +17 more
semanticscholar +1 more source
Horticulture Research, 2021 Dormancy-associated MADS-box ( DAM ) genes serve as crucial regulators of the endodormancy cycle in rosaceous plants. Although pear DAM genes have been identified previously, the lack of a high-quality reference genome and techniques to study gene ...
Yuhao Gao +10 more
semanticscholar +1 more source
Frontiers in Plant Science, 2021 Genes have been lost or weakened from cultivated rice during rice domestication and breeding. Weedy rice (Oryza sativa f. spontanea) is usually recognized as the progeny between cultivated rice and wild rice and is also known to harbor an gene pool for ...
Fei Li +19 more
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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
BMC Bioinformatics, 2011 BackgroundRNA-Seq is revolutionizing the way transcript abundances are measured. A key challenge in transcript quantification from RNA-Seq data is the handling of reads that map to multiple genes or isoforms.
Bo Li, Colin N. Dewey
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New Phytologist, 2022 Summary Underutilized crops are, by definition, under‐researched compared to staple crops yet come with traits that may be especially important given climate change and the need to feed a globally increasing population.
M. Chapman, Yuqi He, Meiliang Zhou
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The zebrafish reference genome sequence and its relationship to the human genome
Nature, 2013 Zebrafish have become a popular organism for the study of vertebrate gene function. The virtually transparent embryos of this species, and the ability to accelerate genetic studies by gene knockdown or overexpression, have led to the widespread use of ...
K. Howe +176 more
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Reference genome assemblies reveal the origin and evolution of allohexaploid oat
Nature Genetics, 2021 Common oat (Avena sativa) is an important cereal crop serving as a valuable source of forage and human food. Although reference genomes of many important crops have been generated, such work in oat has lagged behind, primarily owing to its large, repeat ...
Yuanying Peng +32 more
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