Results 1 to 10 of about 27,166 (184)

Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics

open access: yesBiology, 2018
One particular class of Transposable Elements (TEs), called Long Terminal Repeats (LTRs), retrotransposons, comprises the most abundant mobile elements in plant genomes.
Simon Orozco-Arias   +7 more
doaj   +4 more sources

Retrotransposons: How the continuous evolutionary front shapes plant genomes for response to heat stress

open access: yesFrontiers in Plant Science, 2022
Long terminal repeat retrotransposons (LTR retrotransposons) are the most abundant group of mobile genetic elements in eukaryotic genomes and are essential in organizing genomic architecture and phenotypic variations.
Pradeep K. Papolu   +13 more
doaj   +3 more sources

RNA Editing and Retrotransposons in Neurology [PDF]

open access: yesFrontiers in Molecular Neuroscience, 2018
Compared to sites in protein-coding sequences many more targets undergoing adenosine to inosine (A-to-I) RNA editing were discovered in non-coding regions of human cerebral transcripts, particularly in genetic transposable elements called ...
Heinz Krestel   +2 more
doaj   +5 more sources

A Missing Link between Retrotransposons and Retroviruses

open access: yesmBio, 2022
The origin and deep evolution of retroviruses remain largely unclear. It has been proposed that retroviruses might have originated from a Ty3/Gypsy retrotransposon, but all known Ty3/Gypsy retrotransposons are only distantly related to retroviruses ...
Jianhua Wang, Guan-Zhu Han
doaj   +3 more sources

Hide and seek: de novo identification in sugar beet reveals impact of non-autonomous LTR retrotransposons [PDF]

open access: yesMobile DNA
Plant genomes are filled with retrotransposons and their derivatives, constantly undergoing sequence diversification and structural rearrangement. Among them, short, non-autonomous retrotransposons lack full coding capacity and often form subfamilies. As
Sophie Maiwald   +2 more
doaj   +2 more sources

Characterization of two non-LTR retrotransposons from Sogatella furcifera and Nilaparvata lugens [PDF]

open access: yesArthropods, 2019
The fiWe have cloned two retrotransposons, one named SF-RT from Sogatella furcifera and another named NL-Rt from Nilaparvata lugens genome. Both SF-RT and NL-RT are members of the Daphne clade, and encode two open reading frames (ORFs) required for ...
Jia Lin, Mei Zhang, JingYi He, et al.
doaj   +2 more sources

Cell Compartment-Specific Folding of Ty1 Long Terminal Repeat Retrotransposon RNA Genome

open access: yesViruses, 2022
The structural transitions RNAs undergo during trafficking are not well understood. Here, we used the well-developed yeast Ty1 retrotransposon to provide the first structural model of genome (g) RNA in the nucleus from a retrovirus-like transposon ...
Małgorzata Zawadzka   +4 more
doaj   +1 more source

Stress Induced Activation of LTR Retrotransposons in the Drosophila melanogaster Genome

open access: yesLife, 2023
Background: Retrotransposons with long terminal repeats (LTR retrotransposons) are widespread in all groups of eukaryotes and are often both the cause of new mutations and the source of new sequences.
Polina A. Milyaeva   +3 more
doaj   +1 more source

Genome-wide characterization of LTR retrotransposons in the non-model deep-sea annelid Lamellibrachia luymesi

open access: yesBMC Genomics, 2021
Background Long Terminal Repeat retrotransposons (LTR retrotransposons) are mobile genetic elements composed of a few genes between terminal repeats and, in some cases, can comprise over half of a genome’s content.
Oluchi Aroh, Kenneth M. Halanych
doaj   +1 more source

Disruption of piRNA machinery by deletion of ASZ1/GASZ results in the expression of aberrant chimeric transcripts in gonocytes

open access: yesThe Journal of Reproduction and Development, 2022
In the male germline, the machinery to repress retrotransposons that threaten genomic integrity via the piRNA pathway is established in gonocytes. It has been reported that disruption of the piRNA pathway leads to activation of retrotransposons and ...
Shinya IKEDA   +6 more
doaj   +1 more source

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