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RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

open access: yesRNA: A publication of the RNA Society, 2017
RNA-Puzzles is a collective experiment in blind 3D RNA structure prediction. We report here a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch aptamers and puzzle 7, a ribozyme structure, are included in this round
Zhichao Miao   +45 more
semanticscholar   +1 more source

Hairpin Ribozyme Genes Curtail Alcohol Drinking: from Rational Design to in vivo Effects in the Rat

open access: yesMolecular Therapy: Nucleic Acids, 2016
Ribozyme genes were designed to reduce voluntary alcohol drinking in a rat model of alcohol dependence. Acetaldehyde generated from alcohol in the liver is metabolized by the mitochondrial aldehyde dehydrogenase (ALDH2) such that diminishing ALDH2 ...
Amalia Sapag   +5 more
doaj   +1 more source

Force for ancient and recent life: viral and stem-loop RNA consortia promote life. [PDF]

open access: yes, 2014
Lytic viruses were thought to kill the most numerous host (i.e., kill the winner). But persisting viruses/defectives can also protect against viruses, especially in a ubiquitous virosphere. In 1991, Yarmolinsky et al.
Villarreal, Luis P
core   +1 more source

Inhibition of telomerase activity by HDV ribozyme in cancers

open access: yesJournal of Experimental & Clinical Cancer Research, 2011
Background Telomerase plays an important role in cell proliferation and carcinogenesis and is believed to be a good target for anti-cancer drugs. Elimination of template function of telomerase RNA may repress the telomerase activity.
Gao Yanjing   +4 more
doaj   +1 more source

Selecting RNA aptamers for synthetic biology: investigating magnesium dependence and predicting binding affinity. [PDF]

open access: yes, 2010
The ability to generate RNA aptamers for synthetic biology using in vitro selection depends on the informational complexity (IC) needed to specify functional structures that bind target ligands with desired affinities in physiological concentrations of ...
Carothers, James M   +4 more
core   +2 more sources

Ligand‐dependent ribozymes [PDF]

open access: yesWIREs RNA, 2016
The discovery of catalytic RNA (ribozymes) more than 30 years ago significantly widened the horizon of RNA‐based functions in natural systems. Similarly to the activity of protein enzymes that are often modulated by the presence of an interaction partner, some examples of naturally occurring ribozymes are influenced by ligands that can either act as ...
Felletti, Michele, Hartig, Jörg S.
openaire   +3 more sources

Polyanion-Assisted Ribozyme Catalysis Inside Complex Coacervates.

open access: yesACS Chemical Biology, 2019
Owing to their ability to encapsulate biomolecules, complex coacervates formed by associative phase separation of oppositely charged polyelectrolytes have been postulated as prebiotic nonmembranous compartments (NMCs).
Raghav R. Poudyal   +2 more
semanticscholar   +1 more source

The Kiss Switch Brings Inactive R3C Ligase Ribozyme Back to Life

open access: yesBiology, 2018
R3C ligase ribozyme catalyzes the nucleophilic attack by a 3′-hydroxyl on a 5′-α-phosphorus of triphosphates to form a 3′-5′-phosphodiester bond. In the present study, although the truncation of R3C ribozyme was accompanied by a large reduction in ...
Kana Tanizawa   +4 more
doaj   +1 more source

Arginine cofactors on the polymerase ribozyme. [PDF]

open access: yesPLoS ONE, 2011
The RNA world hypothesis states that the early evolution of life went through a stage in which RNA served both as genome and as catalyst. The central catalyst in an RNA world organism would have been a ribozyme that catalyzed RNA polymerization to ...
Chengguo Yao   +4 more
doaj   +1 more source

A tetracycline-dependent ribozyme switch allows conditional induction of gene expression in Caenorhabditis elegans

open access: yesNature Communications, 2019
The nematode Caenorhabditis elegans represents an important research model. Convenient methods for conditional induction of gene expression in this organism are not available.
Lena A. Wurmthaler   +4 more
semanticscholar   +1 more source

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