Comparative evaluation of DNA and RNA probes for capture-based mitochondrial DNA next-generation sequencing [PDF]
Background Probe-based liquid-phase hybridization capture is a powerful and commonly used approach for next-generation sequencing (NGS) of mitochondrial DNA (mtDNA).
Tianlei Sun +8 more
doaj +4 more sources
A PCR-Based Method for RNA Probes and Applications in Neuroscience [PDF]
In situ hybridization (ISH) is a powerful technique that is used to detect the localization of specific nucleic acid sequences for understanding the organization, regulation, and function of genes.
Ruifang Hua +6 more
doaj +2 more sources
Enzymatic synthesis of reactive RNA probes containing squaramate-linked cytidine or adenosine for bioconjugations and cross-linking with lysine-containing peptides and proteins [PDF]
Protein-RNA interactions play important biological roles and hence reactive RNA probes for cross-linking with proteins are important tools in their identification and study.
Ivana Ivancová +7 more
doaj +2 more sources
Imaging of endogenous RNA in live cells using sequence-activated fluorescent RNA probes. [PDF]
Zheng H, Liu X, Liu L, Hu J, Chen X.
europepmc +3 more sources
RNA imaging is of great importance for understanding its complex spatiotemporal dynamics and cellular functions. Considerable effort has been devoted to the development of small-molecule fluorescent probes for RNA imaging.
Lan Fang +8 more
doaj +1 more source
Identification of soybean trans-factors associated with plastid RNA editing sites [PDF]
RNA editing is a posttranscriptional process that changes nucleotide sequences, among which cytosine-to-uracil by a deamination reaction can revert non-neutral codon mutations.
Nureyev F. Rodrigues +3 more
doaj +1 more source
Sets of RNA repeated tags and hybridization-sensitive fluorescent probes for distinct images of RNA in a living cell. [PDF]
BACKGROUND: Imaging the behavior of RNA in a living cell is a powerful means for understanding RNA functions and acquiring spatiotemporal information in a single cell.
Takeshi Kubota +4 more
doaj +1 more source
Quantification of virus-infected cells using RNA FISH-Flow
Summary: We present a protocol to detect cells that have been infected by RNA viruses. The method, RNA fluorescence in situ hybridization flow cytometry (RNA FISH-Flow), uses 48 fluorescently labeled DNA probes that hybridize in tandem to viral RNA.
Cody J. Warren +6 more
doaj +1 more source
Highly Sensitive and Multiplexed In Situ RNA Profiling with Cleavable Fluorescent Tyramide
Understanding the composition, regulation, and function of complex biological systems requires tools that quantify multiple transcripts at their native cellular locations.
Lu Xiao, Joshua Labaer, Jia Guo
doaj +1 more source

