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Comparative evaluation of DNA and RNA probes for capture-based mitochondrial DNA next-generation sequencing [PDF]

open access: goldBMC Biology
Background Probe-based liquid-phase hybridization capture is a powerful and commonly used approach for next-generation sequencing (NGS) of mitochondrial DNA (mtDNA).
Tianlei Sun   +8 more
doaj   +4 more sources

A PCR-Based Method for RNA Probes and Applications in Neuroscience [PDF]

open access: yesFrontiers in Neuroscience, 2018
In situ hybridization (ISH) is a powerful technique that is used to detect the localization of specific nucleic acid sequences for understanding the organization, regulation, and function of genes.
Ruifang Hua   +6 more
doaj   +2 more sources

Enzymatic synthesis of reactive RNA probes containing squaramate-linked cytidine or adenosine for bioconjugations and cross-linking with lysine-containing peptides and proteins [PDF]

open access: yesCommunications Chemistry
Protein-RNA interactions play important biological roles and hence reactive RNA probes for cross-linking with proteins are important tools in their identification and study.
Ivana Ivancová   +7 more
doaj   +2 more sources

Development of a Highly Selective and Sensitive Fluorescent Probe for Imaging RNA Dynamics in Live Cells

open access: yesMolecules, 2022
RNA imaging is of great importance for understanding its complex spatiotemporal dynamics and cellular functions. Considerable effort has been devoted to the development of small-molecule fluorescent probes for RNA imaging.
Lan Fang   +8 more
doaj   +1 more source

Identification of soybean trans-factors associated with plastid RNA editing sites [PDF]

open access: yesGenetics and Molecular Biology, 2020
RNA editing is a posttranscriptional process that changes nucleotide sequences, among which cytosine-to-uracil by a deamination reaction can revert non-neutral codon mutations.
Nureyev F. Rodrigues   +3 more
doaj   +1 more source

Sets of RNA repeated tags and hybridization-sensitive fluorescent probes for distinct images of RNA in a living cell. [PDF]

open access: yesPLoS ONE, 2010
BACKGROUND: Imaging the behavior of RNA in a living cell is a powerful means for understanding RNA functions and acquiring spatiotemporal information in a single cell.
Takeshi Kubota   +4 more
doaj   +1 more source

Quantification of virus-infected cells using RNA FISH-Flow

open access: yesSTAR Protocols, 2023
Summary: We present a protocol to detect cells that have been infected by RNA viruses. The method, RNA fluorescence in situ hybridization flow cytometry (RNA FISH-Flow), uses 48 fluorescently labeled DNA probes that hybridize in tandem to viral RNA.
Cody J. Warren   +6 more
doaj   +1 more source

Highly Sensitive and Multiplexed In Situ RNA Profiling with Cleavable Fluorescent Tyramide

open access: yesCells, 2021
Understanding the composition, regulation, and function of complex biological systems requires tools that quantify multiple transcripts at their native cellular locations.
Lu Xiao, Joshua Labaer, Jia Guo
doaj   +1 more source

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