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Current Developments in RNA Sequence Analysis [PDF]

Bioinformatics and Biology Insights, 2015
field with online, open access to highly relevant scholarly articles by leading international researchers. In a field where the literature is ever-expanding, researchers increasingly need access to up-to-date, high quality scholarly articles on areas of specific contemporary interest.
Jianping Zhang, Shaolei Teng, Cuncong Zhong, Bo Wang, Jie Wu   +4 more
doaj   +5 more sources

Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation [PDF]

BMC Bioinformatics, 2021
Background The DNA sequences encoding ribosomal RNA genes (rRNAs) are commonly used as markers to identify species, including in metagenomics samples that may combine many organismal communities.
Alejandro A. Schäffer, Richard McVeigh, Barbara Robbertse, Conrad L. Schoch, Anjanette Johnston, Beverly A. Underwood, Ilene Karsch-Mizrachi, Eric P. Nawrocki   +7 more
doaj   +2 more sources

RNA sequence analysis landscape: A comprehensive review of task types, databases, datasets, word embedding methods, and language models [PDF]

Heliyon
Deciphering information of RNA sequences reveals their diverse roles in living organisms, including gene regulation and protein synthesis. Aberrations in RNA sequence such as dysregulation and mutations can drive a diverse spectrum of diseases including ...
Muhammad Nabeel Asim, Muhammad Ali Ibrahim, Tayyaba Asif, Andreas Dengel   +3 more
doaj   +2 more sources

Sequence variant analysis of RNA sequences in severe equine asthma [PDF]

PeerJ, 2018
Background Severe equine asthma is a chronic inflammatory disease of the lung in horses similar to low-Th2 late-onset asthma in humans. This study aimed to determine the utility of RNA-Seq to call gene sequence variants, and to identify sequence variants
Laurence Tessier, Olivier Côté, Dorothee Bienzle   +2 more
doaj   +4 more sources

Noncoding RNA gene detection using comparative sequence analysis [PDF]

BMC Bioinformatics, 2001
Background Noncoding RNA genes produce transcripts that exert their function without ever producing proteins. Noncoding RNA gene sequences do not have strong statistical signals, unlike protein coding genes.
Eddy Sean R, Rivas Elena
doaj   +2 more sources

Sequence analysis of L RNA of Lassa virus

Virology, 2003
The L RNA of three Lassa virus strains originating from Nigeria, Ghana/Ivory Coast, and Sierra Leone was sequenced and the data subjected to structure predictions and phylogenetic analyses. The L gene products had 2218-2221 residues, diverged by 18% at the amino acid level, and contained several conserved regions.
Simon Vieth, Andrew E. Torda, Marcel Asper, Herbert Schmitz, Stephan Günther   +4 more
openalex   +4 more sources

ScanFold 2.0: a rapid approach for identifying potential structured RNA targets in genomes and transcriptomes [PDF]

PeerJ, 2022
A major limiting factor in target discovery for both basic research and therapeutic intervention is the identification of structural and/or functional RNA elements in genomes and transcriptomes.
Ryan J. Andrews, Warren B. Rouse, Collin A. O’Leary, Nicholas J. Booher, Walter N. Moss   +4 more
doaj   +2 more sources

TRANSCRIPTOMIC DIFFERENCES IN MONOZYGOTIC TWINS WITH OVARIAN CANCER

Sabiad, 2022
Objectives: The most significant barrier to treating epithelial ovarian cancer(EOC), is the late diagnosis and the emergence of chemotherapy resistance in the early stages.The ineffectiveness of standard treatment protocols in advanced-stage cases ...
Gözde Kuru Türkcan, Demet Akdeniz Ödemiş, Büşra Kurt Gültaşlar, Şeref Buğra Tunçer, Seda Kılıç Erciyas, Özge Şükrüoğlu Erdoğan, Hülya Yazıcı   +6 more
doaj   +1 more source

RNA Sequencing and Analysis [PDF]

Cold Spring Harbor Protocols, 2015
RNA sequencing (RNA-Seq) uses the capabilities of high-throughput sequencing methods to provide insight into the transcriptome of a cell. Compared to previous Sanger sequencing- and microarray-based methods, RNA-Seq provides far higher coverage and greater resolution of the dynamic nature of the transcriptome.
Kimberly R. Kukurba, Stephen B. Montgomery   +1 more
openaire   +3 more sources

Computational Analysis of RNA Nucleotide Sequences [PDF]

International Journal of Trend in Scientific Research and Development, 2019
One of the most fascinating and deeply researched fields of all of the biochemical components are the nucleic acids and proteins, especially because of their dynamic structure and function and their fundamental role in the course of evolution. Sequence studies have been carried out and is still being researched on to decode completely the world of ...
Shall Juneja, Deepayan Mukherjee, Sachi Garg   +2 more
openaire   +1 more source