Results 11 to 20 of about 15,140,513 (376)
Editorial: Plant RNA structure [PDF]
Frontiers in Plant Science, 2023 Huakun Zhang +3 more
doaj +4 more sources
Assessment of three-dimensional RNA structure prediction in CASP15
bioRxiv, 2023 The prediction of RNA three-dimensional structures remains an unsolved problem. Here, we report assessments of RNA structure predictions in CASP15, the first CASP exercise that involved RNA structure modeling.
Rhiju Das +11 more
semanticscholar +3 more sources
Deep Learning in RNA Structure Studies
Frontiers in Molecular Biosciences, 2022 Deep learning, or artificial neural networks, is a type of machine learning algorithm that can decipher underlying relationships from large volumes of data and has been successfully applied to solve structural biology questions, such as RNA structure ...
Haopeng Yu, Yiman Qi, Yiliang Ding
doaj +2 more sources
RNA secondary structure design [PDF]
Physical Review E, 2006 We consider the inverse-folding problem for RNA secondary structures: for a given (pseudo-knot-free) secondary structure find a sequence that has that structure as its ground state. If such a sequence exists, the structure is called designable.
A. K. Hartmann +8 more
core +6 more sources
Mapping RNA–RNA interactome and RNA structure in vivo by MARIO
Nature Communications, 2016 Current methods for mapping RNA-RNA interactions have to rely on an ‘anchor’ protein or RNA. Here, the authors report the MARIO (Mapping RNA interactome in vivo) technology that can massively reveal RNA-RNA interactions and RNA structure from unperturbed
Tri C. Nguyen +9 more
doaj +2 more sources
Interpretable RNA Foundation Model from Unannotated Data for Highly Accurate RNA Structure and Function Predictions [PDF]
bioRxiv, 2022 Non-coding RNA structure and function are essential to understanding various biological processes, such as cell signaling, gene expression, and post-transcriptional regulations. These are all among the core problems in the RNA field.
Jiayang Chen +10 more
semanticscholar +1 more source
Unveiling RNA structure-mediated regulations of RNA stability in wheat [PDF]
Nature CommunicationsDespite the critical role of mRNA stability in post-transcriptional gene regulation, research on this topic in wheat, a vital agricultural crop, remains unclear. Our study investigated the mRNA decay landscape of durum wheat (Triticum turgidum L.
Haidan Wu +10 more
doaj +2 more sources
Alternate RNA Structures [PDF]
Cold Spring Harbor Perspectives in Biology, 2020 RNA molecules fold into complex three-dimensional structures that sample alternate conformations ranging from minor differences in tertiary structure dynamics to major differences in secondary structure. This allows them to form entirely different substructures with each population potentially giving rise to a distinct biological outcome.
Marie Teng-Pei, Wu, Victoria, D'Souza
openaire +2 more sources
RNA Biology, 2022 RNA translation is the rate-limiting step when cells synthesize proteins. Elevating translation efficiency (TE) is intuitively beneficial. Particularly, when viruses invade host cells, how to compete with endogenous RNAs for efficient translation is a ...
Lin Zhu +4 more
doaj +1 more source
Thoughts on how to think (and talk) about RNA structure
Proceedings of the National Academy of Sciences of the United States of America, 2022 Recent events have pushed RNA research into the spotlight. Continued discoveries of RNA with unexpected diverse functions in healthy and diseased cells, such as the role of RNA as both the source and countermeasure to a severe acute respiratory syndrome ...
Q. Vicens, J. Kieft
semanticscholar +1 more source