Results 21 to 30 of about 1,038,708 (317)
BMC Bioinformatics, 2021 Background The functions of RNA molecules are mainly determined by their secondary structures. These functions can also be predicted using bioinformatic tools that enable the alignment of multiple RNAs to determine functional domains and/or classify RNA ...
Tomasz Woźniak +3 more
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Structural 3D Domain Reconstruction of the RNA Genome from Viruses with Secondary Structure Models
Viruses, 2021 Three-dimensional RNA domain reconstruction is important for the assembly, disassembly and delivery functionalities of a packed proteinaceus capsid. However, to date, the self-association of RNA molecules is still an open problem. Recent chemical probing
Simón Poblete, Horacio V. Guzman
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On Topological RNA Interaction Structures [PDF]
Journal of Computational Biology, 2013 Abstract Recently a folding algorithm of topological RNA pseudoknot structures was presented in Reidys et al. ( 2011 ). This algorithm folds single-stranded γ -structures, that is, RNA structures composed by distinct motifs of bounded ...
Jing Qin 0006, Christian M. Reidys
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Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses:Implications for virus evolution and host persistence [PDF]
, 2004 Discrete RNA secondary and higher-order structures, typically local in extent, play a fundamental role in RNA virus replication. Using new bioinformatics analysis methods, we have identified genome-scale ordered RNA structure (GORS) in many genera and ...
Evans, David J +5 more
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Deep Learning in RNA Structure Studies
Frontiers in Molecular Biosciences, 2022 Deep learning, or artificial neural networks, is a type of machine learning algorithm that can decipher underlying relationships from large volumes of data and has been successfully applied to solve structural biology questions, such as RNA structure ...
Haopeng Yu, Yiman Qi, Yiliang Ding
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Shapes of RNA Pseudoknot Structures [PDF]
Journal of Computational Biology, 2010 Abstract In this article, we study abstract shapes of k -noncrossing, σ -canonical RNA pseudoknot structures.
Christian M. Reidys, Rita R. Wang
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Counting RNA Pseudoknotted Structures [PDF]
Journal of Computational Biology, 2011 Abstract In 2004, Condon and coauthors gave a hierarchical classification of exact RNA structure prediction algorithms according to the generality of structure classes that they handle. We complete this classification by adding two recent prediction algorithms. More importantly, we precisely quantify the hierarchy
Saule, Cédric +3 more
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RNA-specific ribonucleotidyl transferases [PDF]
, 2007 RNA-specific nucleotidyl transferases (rNTrs) are a diverse family of template-independent polymerases that add ribonucleotides to the 3'-ends of RNA molecules.
Keller, W. +3 more
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Computational and Structural Biotechnology Journal, 2022 RNA secondary structures can carry out essential cellular functions alone or interact with one another to form the hierarchical tertiary structures.
Tzu-Hsien Yang +3 more
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Canonical RNA Pseudoknot Structures [PDF]
Journal of Computational Biology, 2008 21 pages,7 ...
Gang Ma, Christian M. Reidys
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