Results 181 to 190 of about 1,075,768 (202)

Dysbiosis of the stool DNA and RNA virome in Crohn's disease

Journal of Medical Virology, 2023
Pathogenesis of Crohn's disease (CD) relates to gut microbiome dysbiosis. However, less is known about the viral microbiome, consisting of bacteriophages and eukaryotic viruses, in CD.
C. Kong, Guang Liu, M. Kalady, Tao Jin, Yanlei Ma   +4 more
semanticscholar   +3 more sources

High-resolution Metatranscriptomic Characterization of the Pulmonary RNA Virome After Lung Transplantation

Transplantation, 2021
Supplemental Digital Content is available in the text. Background. Lung transplantation provides a unique opportunity to investigate the constituents and temporal dynamics of the human pulmonary microbiome after lung transplantation.
A. Mitchell, Ci-xiu Li, B. Oliver, E. Holmes, A. Glanville   +4 more
semanticscholar   +3 more sources

RNA Virome Composition Is Shaped by Sampling Ecotype

SSRN Electronic Journal, 2021
Despite the remarkable diversity of RNA viruses, little is known about how the physical and biotic properties of local environments impact virome compositions. Utilizing an expansive metatranscriptomic data set from 32 different physical and geographic environments, we identified 2,683 novel viruses from soil, sediment, and animal faecal samples ...
Yan-Mei Chen, Sabrina Sadiq, Jun-hua Tian, Xiao Chen, Xian-dan Lin, Jin-jin Shen, Hao Chen, Z. Hao, Wei-Di Yang, Zhuoyang Zhou, Jun Wu, Feng Li, Hong-Wei Wang, Qi-Yi Xu, Wen Wang, Wen-Hua Gao, E. Holmes, Yong‐Zhen Zhang   +17 more
semanticscholar   +2 more sources

Functional viromic screens uncover regulatory RNA elements

Cell, 2023
The number of sequenced viral genomes has surged recently, presenting an opportunity to understand viral diversity and uncover unknown regulatory mechanisms. Here, we conducted a screening of 30,367 viral segments from 143 species representing 96 genera and 37 families.
Jenny J, Seo, Soo-Jin, Jung, Jihye, Yang, Da-Eun, Choi, V Narry, Kim   +4 more
openaire   +2 more sources

Blood meal source identification and RNA virome determination in Japanese encephalitis virus vectors collected in Ishikawa Prefecture, Japan, show distinct avian/mammalian host preference

Journal of medical entomology, 2023
In Asia, Culex mosquitoes are of particular interest because of their role in maintaining endemic mosquito-borne viral diseases, including the Japanese encephalitis virus (JEV).
Astri Nur Faizah, Daisuke Kobayashi, Ryo Matsumura, M. Watanabe, Y. Higa, K. Sawabe, H. Isawa   +6 more
semanticscholar   +1 more source

LucaProt reveals the diverse global RNA virome

Nature Biotechnology
Iris Marchal
semanticscholar   +3 more sources

RNA viromes from terrestrial sites across China expand environmental viral diversity

Nature Microbiology, 2022
Environmental RNA viruses are ubiquitous and diverse, and probably have important ecological and biogeochemical impacts. Understanding the global diversity of RNA viruses is limited by sampling biases, dependence on cell culture and PCR for virus discovery, and a focus on viruses pathogenic to humans or economically important animals and plants.
Yan-Mei Chen, Sabrina Sadiq, Jun-Hua Tian, Xiao Chen, Xian-Dan Lin, Jin-Jin Shen, Hao Chen, Zong-Yu Hao, Michelle Wille, Zhuo-Cheng Zhou, Jun Wu, Feng Li, Hong-Wei Wang, Wei-Di Yang, Qi-Yi Xu, Wen Wang, Wen-Hua Gao, Edward C. Holmes, Yong-Zhen Zhang   +18 more
openaire   +2 more sources

Decoding the DNA and RNA viromes of a tropical urban lagoon

Environmental Microbiology, 2023
Abstract Human and livestock sewage is one of the major causes of excess nutrients, leading to the eutrophication of aquatic ecosystems and potentially to the emergence or spread of pathogenic viruses. This study aimed to investigate the composition and diversity of aquatic viromes in a highly anthropized lagoon ...
Andrianjakarivony, Felana Harilanto, Bettarel, Yvan, Cecchi, Philippe, Bouchard, Sonia, Chase, Emily, Desnues, Christelle   +5 more
openaire   +3 more sources

Protocol for Generating Infectious RNA Viromes from Complex Biological Samples

2018
This chapter proposes a simple, standardized protocol for generating RNA viromes from complex host-associated biological samples of various origins. Compared to other existing protocols to generate RNA viromes, this protocol preserves the infectivity of viral particles and allows for downstream applications such as viral characterization and isolation ...
Monteil-Bouchard, Sonia, Temmam, Sarah, Desnues, Christelle   +2 more
openaire   +2 more sources