Results 31 to 40 of about 1,075,768 (202)

Expansion of the global RNA virome reveals diverse clades of bacteriophages

Cell, 2022
High-throughput RNA sequencing offers broad opportunities to explore the Earth RNA virome. Mining 5,150 diverse metatranscriptomes uncovered >2.5 million RNA virus contigs. Analysis of >330,000 RNA-dependent RNA polymerases (RdRPs) shows that this expansion corresponds to a 5-fold increase of the known RNA virus diversity.
Uri Neri, Y. Wolf, S. Roux, A. Camargo, Benjamin D. Lee, Darius Kazlauskas, I. Chen, Natalia N. Ivanova, L. Z. Allen, David Páez-Espino, D. Bryant, D. Bhaya, M. Krupovic, V. Dolja, N. Kyrpides, E. Koonin, U. Gophna, Adrienne B. Narrowe, Alexander J. Probst, A. Sczyrba, A. Kohler, A. Séguin, A. Shade, B. Campbell, Björn D. Lindahl, B. Reese, B. Roque, C. DeRito, C. Averill, D. Cullen, David A. C. Beck, D. Walsh, D. M. Ward, Dongying Wu, E. Eloe-Fadrosh, Eoin L. Brodie, E. Young, E. Lilleskov, F. Castillo, Francis M. Martin, Gary R. LeCleir, G. Attwood, H. Cadillo-Quiroz, H. Simon, I. Hewson, I. Grigoriev, J. Tiedje, J. Jansson, Janey Lee, J. VanderGheynst, J. Dangl, J. Bowman, Jeffrey L. Blanchard, J. Bowen, Jiangbin Xu, J. Banfield, J. Deming, J. Kostka, J. Gladden, J. Rapp, Joshua L. Sharpe, K. McMahon, K. Treseder, K. Bidle, K. Wrighton, K. Thamatrakoln, K. Nusslein, Laura K. Meredith, L. Ramírez, M. Buée, Marcel Huntemann, M. Kalyuzhnaya, M. Waldrop, M. Sullivan, M. Schrenk, M. Hess, Michael A. Vega, M. O’Malley, Mónica Medina, N. Gilbert, N. Delherbe, O. U. Mason, P. Dijkstra, P. Chuckran, P. Baldrian, P. Constant, R. Stepanauskas, R. Daly, Regina Lamendella, R. Gruninger, R. Mckay, S. Hylander, Sarah L. Lebeis, S. Esser, S. Acinas, Steven Wilhelm, S. Singer, Susannah Tringe, T. Woyke, T. Reddy, Terrence H. Bell, T. Mock, T. McAllister, V. Thiel, Vincent J. Denef, Wen-Tso Liu, Willm Martens‐Habbena, Xiao‐Jun Allen Liu, Zachary S. Cooper, Zhong Wang   +109 more
semanticscholar   +10 more sources

Viromics Reveal a Number of Novel RNA Viruses in Swedish Mosquitoes [PDF]

Viruses, 2019
Metagenomic studies of mosquitoes have revealed that their virome is far more diverse and includes many more viruses than just the pathogenic arboviruses vectored by mosquitoes.
Pontus Öhlund, Juliette Hayer, Hanna Lundén, Jenny C. Hesson, Anne-Lie Blomström   +4 more
doaj   +6 more sources

Virome profiling of Culex tarsalis through small RNA-seq: A challenge of suboptimal samples. [PDF]

PLoS Neglected Tropical Diseases
Viral infections in mosquitoes trigger the RNA interference (RNAi) pathway, a key antiviral defense mechanism that generates virus-derived small RNAs (vsRNAs).
Jaime Manzano-Alvarez, Sultan Asad, Duverney Chaverra-Rodriguez, Eunho Suh, Jason L Rasgon   +4 more
doaj   +2 more sources

An efficient metatranscriptomic approach for capturing RNA virome and its application to SARS-CoV-2. [PDF]

J Genet Genomics, 2021
Meng Y, Xiao L, Chen W, Zhao F, Zhao X.
europepmc   +2 more sources

A Comprehensive Review: Molecular Diagnostics and Multi-Omics Approaches to Understanding Bovine Respiratory Disease [PDF]

Veterinary Sciences
Bovine respiratory disease (BRD) is a multifactorial syndrome and a leading cause of morbidity and economic loss in global cattle production. Next-generation sequencing (NGS) platforms, including Illumina and Oxford Nanopore Technologies (ONT), have ...
Stephanie O’Donoghue, Sinéad M. Waters, Derek W. Morris, Bernadette Earley   +3 more
doaj   +2 more sources

Environmental viromes reveal global virosphere of deep-sea sediment RNA viruses

Journal of Advanced Research
Introduction: Viruses are the most abundant and diverse life forms on the earth. Both DNA viruses and RNA viruses play important roles in marine ecosystems via regulating biogeochemical cycles.
Xinyi Zhang, Haitao Wan, Min Jin, Liquan Huang, Xiaobo Zhang   +4 more
doaj   +3 more sources

Viromes in marine ecosystems reveal remarkable invertebrate RNA virus diversity [PDF]

Science China Life Sciences, 2021
AbstractOcean viromes remain poorly understood and little is known about the ecological factors driving aquatic RNA virus evolution. In this study, we used a meta-transcriptomic approach to characterize the viromes of 58 marine invertebrate species across three seas.
Yu-Yi Zhang, Yicong Chen, Xiaoman Wei, Jie Cui   +3 more
openaire   +2 more sources

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome

Science, 2022
Whereas DNA viruses are known to be abundant, diverse, and commonly key ecosystem players, RNA viruses are insufficiently studied outside disease settings. In this study, we analyzed ≈28 terabases of Global Ocean RNA sequences to expand Earth’s RNA virus
A. Zayed, J. Wainaina, Guillermo Domínguez-Huerta, É. Pelletier, Jiarong Guo, Mohamed Mohssen, F. Tian, Akbar Adjie Pratama, B. Bolduc, Olivier Zablocki, Dylan Cronin, L. Solden, E. Delage, A. Alberti, J. Aury, Q. Carradec, C. da Silva, K. Labadie, J. Poulain, H. Ruscheweyh, Guillem Salazar, E. Shatoff, R. Bundschuh, K. Fredrick, L. Kubatko, Samuel Chaffron, Alexander I. Culley, S. Sunagawa, J. Kuhn, P. Wincker, M. Sullivan, S. Acinas, M. Babin, P. Bork, E. Boss, C. Bowler, G. Cochrane, C. de Vargas, G. Gorsky, L. Guidi, N. Grimsley, P. Hingamp, D. Iudicone, O. Jaillon, S. Kandels, L. Karp‐Boss, E. Karsenti, F. Not, H. Ogata, N. Poulton, S. Pesant, C. Sardet, S. Speich, L. Stemmann, M. Sullivan, Shinichi Sungawa, P. Wincker   +56 more
semanticscholar   +1 more source

Expanding the Medfly Virome: Viral Diversity, Prevalence, and sRNA Profiling in Mass-Reared and Field-Derived Medflies

Viruses, 2022
The Mediterranean fruit fly (medfly), Ceratitis capitata, is an agricultural pest of a wide range of fruits. The advent of high-throughput sequencing has boosted the discovery of RNA viruses infecting insects.
Luis Hernández-Pelegrín, Ángel Llopis-Giménez, Cristina Maria Crava, Félix Ortego, Pedro Hernández-Crespo, Vera I. D. Ros, Salvador Herrero   +6 more
doaj   +1 more source

Association of virome dynamics with mosquito species and environmental factors

Microbiome, 2023
Background The pathogenic viruses transmitted by mosquitoes cause a variety of animal and human diseases and public health concerns. Virome surveillance is important for the discovery, and control of mosquito-borne pathogenic viruses, as well as early ...
Qing Liu, Feng Cui, Xiang Liu, Yumei Fu, Wenjing Fang, Xun Kang, Hong Lu, Siping Li, Biao Liu, Wei Guo, Qianfeng Xia, Le Kang, Feng Jiang   +12 more
doaj   +1 more source