Results 21 to 30 of about 93,670 (312)
, 2022 This is a reference scripts of RNAseq pipeline for PREDICT19' project.If you use this software, please cite it as ...
Chew, Tracy, Sadsad, Rosemarie
core +1 more source
Disease Models & Mechanisms, 2022 There is a paucity of adequate mouse models and cell lines available to study lung squamous cell carcinoma (LUSC). We have generated and characterized two models of phenotypically different transplantable LUSC cell lines, i.e.
Karmele Valencia +19 more
doaj +1 more source
Demystification of RNAseq Quality Control
JITA - Journal of Information Technology and Applications (Banja Luka) - APEIRON, 2021 Next Generation Sequencing (NGS) analysis has become a widely used method for studying the structure of DNA and RNA, but complexity of the procedure leads to obtaining error-prone datasets which need to be cleansed in order to avoid misinterpretation of data. We address the usage and proper interpretations of characteristic metrics for RNA sequencing (
Gordana Pavlović-Lažetić +3 more
openaire +2 more sources
nf-core/rnaseq: nf-core/rnaseq v3.13.1 - Ferrous foal
, 2023 <h2>What's Changed</h2> <ul> <li>Changes for 3.13.1 patch release incl. igenomes star fix by @pinin4fjords in https://github.com/nf-core/rnaseq/pull/1121</li> <li>Dev -> master for 3.13.1 release by @pinin4fjords in
Gavin Kelly +29 more
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Long-Read Genome Sequence of the Sugar Beet Rhizosphere Mycoparasite Pythium oligandrum
G3: Genes, Genomes, Genetics, 2020 Pythium oligandrum is a soil born free living oomycete able to parasitize fungi and oomycetes prey, including important plant and animals pathogens. Pythium oligandrum can colonize endophytically the root tissues of diverse plants where it induces plant ...
Charlène Faure +12 more
doaj +1 more source
, 2020 RNA was extracted from both single and double knockdown H2009 cells 48 h post siRNA transfection, and total RNAseq was performed by the Integrative Genomics Core at City of Hope. RSeQC showed no substantial bias in the coverage of RNAseq reads.
Nam, A
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G3: Genes, Genomes, Genetics, 2020 RNA-seq has become the standard tool for collecting genome-wide expression data in diverse fields, from quantitative genetics and medical genomics to ecology and developmental biology.
Luisa F. Pallares +2 more
doaj +1 more source
, 2023 <h2>What's Changed</h2> <ul> <li>Fix bowtie1 regression (log). by @cokelaer in https://github.com/sequana/rnaseq/pull/39</li> <li>Fix typo for multiqc bowtie2 paired reports by @cokelaer in https://github.com/sequana ...
Thomas Cokelaer, Etienne Kornobis
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, 2022 What's Changed <ul> <li>refactorisation to include containers and latest wrappers</li> </ul> <p><strong>Full Changelog</strong>: <a href="https://github.com/sequana/rnaseq/compare/v0.15.2...v0.16.0">https://
Thomas Cokelaer, Etienne Kornobis
core +1 more source