Sequence Versus Composition: What Prescribes IDP Biophysical Properties?
Entropy, 2019 Intrinsically disordered proteins (IDPs) represent a distinct class of proteins and are distinguished from globular proteins by conformational plasticity, high evolvability and a broad functional repertoire.
Jiří Vymětal +2 more
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An Algorithm for Template-Based Prediction of Secondary Structures of Individual RNA Sequences
Frontiers in Genetics, 2017 While understanding the structure of RNA molecules is vital for deciphering their functions, determining RNA structures experimentally is exceptionally hard.
Josef Pánek +2 more
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Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction [PDF]
, 2009 SummaryLocal structures predicted from protein sequences are used extensively in every aspect of modeling and prediction of protein structure and function.
Faraggi, Eshel +3 more
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Biomedical and Biotechnology Research Journal, 2017 Background: With the advent of many new advanced techniques, sequences of a number of proteins have been made available. But the relative paucity of the experimentally determined three-dimensional structures of these proteins has paved way for the ...
Kandavelmani Angamuthu +1 more
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RNA secondary structure prediction using an ensemble of two-dimensional deep neural networks and transfer learning [PDF]
, 2019 The majority of our human genome transcribes into noncoding RNAs with unknown structures and functions. Obtaining functional clues for noncoding RNAs requires accurate base-pairing or secondary-structure prediction.
Zhou, Yaoqi +3 more
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Protein secondary structure prediction methods based on RBF neural networks
, 2004 To solve the complicated non-linear mode-sorting problem of protein secondary structure prediction, the chapter proposed a new method based on radial basis function neural networks and learning from evolution.
Jing N, Zhou CG, Xia B, Wang Y
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A Simple Comparison between Specific Protein Secondary Structure Prediction Tools
Tropical Agricultural Research, 2012 A comparative evaluation of five widely used protein secondary structure prediction programs available in World Wide Web was carried out. Secondary structure data of ten proteins containing 190 secondary structure motifs were collected from Protein Data ...
TJ Koswatta +2 more
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Secondary structure prediction of TMEM98.
, 2020 Secondary structure prediction of TMEM98.
Tanne van der Wal (8339001) +2 more
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RNAstructure: software for RNA secondary structure prediction and analysis
BMC Bioinformatics, 2010 Background To understand an RNA sequence's mechanism of action, the structure must be known. Furthermore, target RNA structure is an important consideration in the design of small interfering RNAs and antisense DNA oligonucleotides.
Mathews David H, Reuter Jessica S
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Sample Reduction Strategies for Protein Secondary Structure Prediction
Applied Sciences, 2019 Predicting the secondary structure from protein sequence plays a crucial role in estimating the 3D structure, which has applications in drug design and in understanding the function of proteins. As new genes and proteins are discovered, the large size of
Sema Atasever +3 more
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