Results 51 to 60 of about 4,572,181 (334)

gpALIGNER: A Fast Algorithm for Global Pairwise Alignment of DNA Sequences [PDF]

Iranian Journal of Chemistry & Chemical Engineering, 2011
Bioinformatics, through the sequencing of the full genomes for many species, is increasingly relying on efficient global alignment tools exhibiting both high sensitivity and specificity.
Mostafa Hadian Dehkordi, Ali Masoudi-Nejad, Morteza Mohamad-Mouri   +2 more
doaj  

Hardware Accelerated Sequence Alignment with Traceback

International Journal of Reconfigurable Computing, 2009
Biological sequence alignment is an essential tool used in molecular biology and biomedical applications. The growing volume of genetic data and the complexity of sequence alignment present a challenge in obtaining alignment results in a timely manner ...
Scott Lloyd, Quinn O. Snell
doaj   +1 more source

Higher accuracy protein Multiple Sequence Alignment by Stochastic Algorithm [PDF]

, 2010
Multiple Sequence Alignment gives insight into evolutionary, structural and functional relationships among the proteins. Here, a novel Protein Alignment by Stochastic Algorithm (PASA) is developed.
Alpana Dey, Justin Jose, Krishna Kant, M. S. Jeevitesh, Narayan Behera   +4 more
core   +1 more source

ViralMSA: Massively scalable reference-guided multiple sequence alignment of viral genomes

bioRxiv, 2020
Motivation In molecular epidemiology, the identification of clusters of transmissions typically requires the alignment of viral genomic sequence data.
Niema Moshiri
semanticscholar   +1 more source

Mapping the evolution of mitochondrial complex I through structural variation

FEBS Letters, EarlyView.
Respiratory complex I (CI) is crucial for bioenergetic metabolism in many prokaryotes and eukaryotes. It is composed of a conserved set of core subunits and additional accessory subunits that vary depending on the organism. Here, we categorize CI subunits from available structures to map the evolution of CI across eukaryotes. Respiratory complex I (CI)
Dong‐Woo Shin, Tingting Chen, James A. Letts   +2 more
wiley   +1 more source

LCSkPOA: enabling banded semi-global partial order alignments via efficient and accurate backbone generation through extended LCSk++

BMC Bioinformatics
Background Most multiple sequence alignment and string-graph alignment algorithms focus on global alignment, but many applications exist for semi-global and local string-graph alignment.
Minindu Weerakoon, Christopher T. Saunders, Haynes Heaton   +2 more
doaj   +1 more source

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH

BMC Bioinformatics, 2010
Background Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become unreliable as they approach the so-called 'twilight zone' where sequence ...
Bastolla Ugo, Minning Jonas, Teichert Florian, Porto Markus   +3 more
doaj   +1 more source

PhAST : pharmacophore alignment search tool [PDF]

, 2009
We developed the Pharmacophore Alignment Search Tool (PhAST), a text-based technique for rapid hit and lead structure searching in large compound databases.
Hofmann, Bettina Petra, Hähnke, Volker Dirk, Proschak, Ewgenij, Schneider, Gisbert (Prof. Dr.), Steinhilber, Dieter   +4 more
core  

Data-driven network alignment

, 2020
Biological network alignment (NA) aims to find a node mapping between species' molecular networks that uncovers similar network regions, thus allowing for transfer of functional knowledge between the aligned nodes.
Gu, Shawn, Milenkovic, Tijana
core   +1 more source

An intracellular transporter mitigates the CO2‐induced decline in iron content in Arabidopsis shoots

FEBS Letters, EarlyView.
This study identifies a gene encoding a transmembrane protein, MIC, which contributes to the reduction of shoot Fe content observed in plants under elevated CO2. MIC is a putative Fe transporter localized to the Golgi and endosomal compartments. Its post‐translational regulation in roots may represent a potential target for improving plant nutrition ...
Timothy Mozzanino, Meijie Li, Cécile Fizames, Mattia Adamo, Laurence Lejay, Christian Dubos, Matthieu Platre, Antoine Martin   +7 more
wiley   +1 more source