Results 91 to 100 of about 4,225,969 (350)

Pairwise alignment of the DNA sequence using hypercomplex number representation [PDF]

Bulletin of Mathematical Biology, Vol. 66, No. 5, pp. 1423-1438, 2004, 2014
A new set of DNA base-nucleic acid codes and their hypercomplex number representation have been introduced for taking the probability of each nucleotide into full account. A new scoring system has been proposed to suit the hypercomplex number representation of the DNA base-nucleic acid codes and incorporated with the method of dot matrix analysis and ...
arxiv   +1 more source

DNA sequence analysis on the IBM-PC [PDF]

Nucleic Acids Research, 1984
We have developed, for the IBM-PC microcomputer, a menu driven, interactive set of programs which provide the functions routinely used for DNA sequence data analyses.
William F. Schwindinger, Jonathan R. Warner   +1 more
openaire   +3 more sources

"Nonrandom" DNA sequence analysis in bacteriophage M13 by the dideoxy chain-termination method.

Proceedings of the National Academy of Sciences of the United States of America, 1982
We describe a rapid "nonrandom" DNA sequence analysis procedure that facilitates the nucleotide sequence determination of large contiguous regions of DNA.
M. Poncz, D. Solowiejczyk, M. Ballantine, E. Schwartz, S. Surrey   +4 more
semanticscholar   +1 more source

Human colon organoid differentiation from induced pluripotent stem cells using an improved method

FEBS Letters, Volume 599, Issue 6, Page 912-924, March 2025.
We compared established protocols to differentiate induced pluripotent stem cells into colon organoids and found that activation of bone morphogenetic protein 2 signaling induced gene expression of colon‐specific markers. Adenovirus‐mediated transduction of the transcription factors HOXD13 or SATB2 further enhanced colonic gene expression, suggesting ...
I‐Ting Lee, Yu Takahashi, Takashi Sasaki, Yoshio Yamauchi, Ryuichiro Sato   +4 more
wiley   +1 more source

DNA Storage Error Simulator: A Tool for Simulating Errors in Synthesis, Storage, PCR and Sequencing [PDF]

arXiv, 2022
DNA has many valuable characteristics that make it suitable for a long-term storage medium, in particular its durability and high information density. DNA can be stored safely for hundreds of years with virtually no degradation, in contrast to hard disk drives which typically last for about 5 years.
arxiv  

Erwinia oleae sp. nov., isolated from olive knots caused by Pseudomonas savastanoi pv. savastanoi [PDF]

, 2011
Three endophytic bacterial isolates were obtained in Italy from olive knots caused by Pseudomonas savastanoi pv. savastanoi. Phenotypic tests in combination with 16S rRNA gene sequence analysis indicated a phylogenetic position of these isolates in the ...
Brady, Carrie, Buonaurio, Roberto, Cleenwerck, Ilse, De Vos, Paul, Hosni, Taha, Moretti, Chiaraluce, Vandemeulebroecke, Katrien   +6 more
core   +1 more source

A DNA sequence analysis package for the IBM personal computer

Nucleic Acids Res., 1984
We present here a collection of DNA sequence analysis programs, called "PC Sequence" (PCS), which are designed to run on the IBM Personal Computer (PC).
L. M. Lagrimini, S. Brentano, J. Donelson   +2 more
semanticscholar   +1 more source

Insights into the renal pathophysiology in Hermansky‐Pudlak syndrome‐1 from urinary extracellular vesicle proteomics and a new mouse model

FEBS Letters, Volume 599, Issue 7, Page 1055-1074, April 2025.
Hermansky‐Pudlak syndrome type 1 (HPS‐1) is a rare, autosomal recessive disorder with poorly understood renal involvement. Urinary extracellular vesicle (uEV) proteomics and a novel Hps1 mouse model reveal mitochondrial abnormalities and lipid accumulation in HPS‐1 kidney proximal tubule cells. Serum ApoA1 correlates with kidney function in our patient
Dawn M. Maynard, Bernadette R. Gochuico, Hadass Pri Chen, Christopher K. E. Bleck, Patricia M. Zerfas, Wendy J. Introne, William A. Gahl, May C. V. Malicdan   +7 more
wiley   +1 more source

Isolation of Unknown Genes from Human Bone Marrow by Differental Screening and Single-Pass cDNA Sequences Determination [PDF]

, 1994
A cDNA sequencing project was initiated to characterize gene expression in human bone marrow and develop strategies to isolate novel genes. Forty-eight random cDNAs from total human bone marrow were subjected to single-pass DNA sequence analysis to ...
Hood, Leroy, Hughes, Tim P., Kato, Roberta M., Orr, Sally R., Quan, Shirley G., Sawyers, Charles L., Williams, Suzanne P., Witte, Owen N.   +7 more
core  

A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments. [PDF]

, 2017
BackgroundPCR amplification is an important step in the preparation of DNA sequencing libraries prior to high-throughput sequencing. PCR amplification introduces redundant reads in the sequence data and estimating the PCR duplication rate is important to
Bansal, Vikas
core   +2 more sources