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Towards an Encyclopaedia of Sequence Biology [PDF]
Linguistic Frontiers, 2018 Abstract In this review, I have presented several topics relevant to the present state and to the future state of the scientific field that I propose to call sequence biology (SB). In some pertinent publications, this field was called DNA linguistics. At the heart of SB lies a concept of a sequence code. In this review, I discussed three Alexander Bolshoy, Alexander Bolshoy, Alexander Bolshoy +2 moreopenaire +3 more sourcesConnecting Sequence and Biology in the Laboratory Mouse [PDF]
Genome Research, 2003 The Mouse Genome Sequencing Consortium and the RIKEN Genome Exploration Research grouphave generated large sets of sequence data representing the mouse genome and transcriptome, respectively. These data provide a valuable foundation for genomic research.Richard M. Baldarelli, David P. Hill, Judith A. Blake, Jun Adachi, Masaaki Furuno, Dirck Bradt, Lori E Corbani, Sharon Cousins, Kenneth S. Frazer, Qi Dong, Longlong Yang, Sridhar Ramachandran, Deborah J. Reed, Yunxia Zhu, Takeya Kasukawa, Martin Ringwald, Benjamin L. King, Lois J. Maltais, Louise M. McKenzie, Lynn M. Schriml, Donna Maglott, Deanna M. Church, Kim D. Pruitt, Janan T. Eppig, Joel E. Richardson, Jim A. Kadin, Carol J. Bult +26 moreopenalex +5 more sourcesThe DNA sequence and biology of human chromosome 19 [PDF]
Nature, 2004 Chromosome 19 has the highest gene density of all human chromosomes, more than double the genome-wide average. The large clustered gene families, corresponding high G + C content, CpG islands and density of repetitive DNA indicate a chromosome rich in biological and evolutionary significance.Jane Grimwood, Laurie Gordon, Anne S. Olsen, Astrid Terry, Jeremy Schmutz, Jane E. Lamerdin, Uffe Hellsten, David Goodstein, Olivier Couronne, Mary Bao Tran-Gyamfi, Andrea Aerts, Michael R. Altherr, Linda K. Ashworth, Eva Bajorek, Stacey Black, Elbert Branscomb, Sean Caenepeel, A.V. Carrano, Chenier Caoile, Yee Man Chan, Mari Christensen, Catherine A. Cleland, Alex Copeland, Eileen Dalin, Paramvir Dehal, Mirian Denys, John C. Detter, Julio Escobar, Dave Flowers, Dea Fotopulos, C. Garćıa, Anca Georgescu, Tijana Glavina, María José Gómez, Eidelyn Gonzales, Matthew Groza, Nancy Hammon, Trevor Hawkins, Lauren E. Haydu, Isaac Ho, Wayne Huang, Sanjay Israni, Jamie Jett, Kristen Kadner, Heather Kimball, Arthur Kobayashi, Vladimer Larionov, Sun‐Hee Leem, Frederick Lopez, Yunian Lou, Steve Lowry, Stephanie Malfatti, Diego Martínez, Paula McCready, Catherine Medina, Jenna Morgan, Kathryn Nelson, Matt Nolan, Ivan Ovcharenko, Sam Pitluck, Martin Pollard, Anthony P. Popkie, Paul Predki, Glenda Quan, Lucı́a Ramı́rez, Sam Rash, James Retterer, Álex Rodríguez, Stephanine Rogers, Asaf Salamov, Angelica Salazar, Xinwei She, Doug Smith, Tom Slezak, Victor Solovyev, Nina Thayer, Hope Tice, Ming Jer Tsai, Anna Ustaszewska, Nu Vo, Mark C. Wagner, Jeremy Wheeler, Kevin Wu, Gary Xie, Joan Yang, Inna Dubchak, Terrence S. Furey, Pieter DeJong, Mark Dickson, David Gordon, Evan E. Eichler, L Pennacchio, Paul Richardson, Lisa Stubbs, Daniel S. Rokhsar, R Myers, Edward M. Rubin, Susan Lucas +97 moreopenalex +4 more sourcesThe Multiple Sequence Alignment Problem in Biology [PDF]
SIAM Journal on Applied Mathematics, 1988 The study and comparison of sequences of characters from a finite alphabet is relevant to various areas of science, notably molecular biology. The measurement of sequence similarity involves the consideration of the different possible sequence alignments in order to find an optimal one for which the “distance” between sequences is minimum.Humberto Carrillo-Calvet, David J. Lipman +1 moreopenalex +4 more sourcesLegume Biology: Sequence to Seeds [PDF]
Plant Physiology, 2007 Research on legumes is driven, to a large extent, by their importance as food crops worldwide. Some 25% of the world's major crop production is derived from legumes, and more than one-third of humanity's nutritional nitrogen requirement comes from legumes.Mark R. O’Brian, Carroll P. Vanceopenalex +5 more sourcesHuman Chromosome 7: DNA Sequence and Biology [PDF]
Science, 2003 DNA sequence and annotation of the entire human chromosome 7, encompassing nearly 158 million nucleotides of DNA and 1917 gene structures, are presented. To generate a higher order description, additional structural features such as imprinted genes, fragile sites, and segmental duplications were integrated at the level of the DNA sequence with medical ...Stephen W. Scherer, Joseph Cheung, Jeffrey R. MacDonald, Lucy R. Osborne, Kazuhiko Nakabayashi, Jo-Anne Herbrick, Andrew R. Carson, Layla Parker-Katiraee, Jennifer Skaug, Razi Khaja, Junjun Zhang, Alexander K. Hudek, Martin Li, May Hobeika Haddad, Gavin E. Duggan, Bridget A. Fernandez, Emiko Kanematsu, S. Gentles, Constantine Christopoulos, Sanaa Choufani, Dorota A. Kwasnicka, Xiangqun Zheng-Bradley, Zhongwu Lai, Deborah Nusskern, Qing Zhang, Zhiping Gu, Fu Lu, Susan Zeesman, Małgorzata J.M. Nowaczyk, Ikuko Teshima, David Chitayat, Cheryl Shuman, Rosanna Weksberg, Elaine H. Zackai, Theresa A. Grebe, Sarah Cox, Susan J. Kirkpatrick, Nazneen Rahman, Jan M. Friedman, Henry H.Q. Heng, Pier Giuseppe Pelicci, Francesco Lo‐Coco, Elena Belloni, Lisa G. Shaffer, Barbara R. Pober, Cynthia C. Morton, James F. Gusella, G.A.P. Bruns, Bruce R. Korf, Bradley J. Quade, Azra H. Ligon, Heather Ferguson, Anne W. Higgins, Natalia T. Leach, Steven R. Herrick, Emmanuelle Lemyre, Chantal G. Farra, Hyung‐Goo Kim, Anne Summers, Karen W. Gripp, Wendy Roberts, Peter Szatmari, E.J.T. Winsor, Karl‐Heinz Grzeschik, Ahmed Teebi, Berge A. Minassian, Juha Kere, Lluı́s Armengol, Miguel Ángel Pujana, Xavier Estivill, Michael D. Wilson, Ben F. Koop, Sabrina Tosi, Gudrun E. Moore, Andrew P. Boright, Eitan Zlotorynski, Batsheva Kerem, Peter M. Kroisel, Erwin Petek, David Oscier, Sarah Mould, Hartmut DoÌhner, Konstanze DoÌhner, Johanna M. Rommens, John B. Vincent, J. Craig Venter, Peter W. Li, Richard Mural, Mark D. Adams, Lap-Chee Tsui +89 moreopenalex +9 more sourcesDeciphering the biology of Mycobacterium tuberculosis from the complete genome sequence [PDF]
Nature, 1998 Stewart T. Cole, R. Brosch, J. Parkhill, T. Garnier, C. Churcher, D. Harris, S. V. Gordon, K. Eiglmeier, S. Gas, Clifton E. Barry, Fredj Tekaia, K. Badcock, D. Basham, D. Brown, T. Chillingworth, R. Connor, R. Davies, K. Devlin, T. Feltwell, S. Gentles, N. Hamlin, S. Holroyd, T. Hornsby, K. Jagels, Anders Krogh, Jack J. McLean, S. Moule, L. Murphy, K. Oliver, J. Osborne, M. A. Quail, M.-A. Rajandream, Josh Rogers, S. Rutter, K. Seeger, J. Skelton, R. Squares, S. Squares, J. E. Sulston, K. Taylor, S. Whitehead, B. G. Barrell +41 moreopenalex +2 more sourcesThe anatomy of an aphid genome: From sequence to biology [PDF]
Comptes Rendus. Biologies, 2010 In 2009, the genome of the pea aphid (Acyrthosiphon pisum) was sequenced and partially annotated. This means that the scientific community has now access to the genetic material of aphids that are serious pests of plants. The description of an aphid genome is a first step to go deeper in the understanding of the biology of these insects.Denis Tagu, Sébastien Dugravot, Yannick Outreman, Claude Rispe, Jean‐Christophe Simon, Stefano Colella +5 moreopenalex +6 more sources