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Integrating sequence and structural biology with DAS [PDF]
BMC Bioinformatics, 2007 Background The Distributed Annotation System (DAS) is a network protocol for exchanging biological data. It is frequently used to share annotations of genomes and protein sequence.
Finn Robert D +5 more
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Towards an Encyclopaedia of Sequence Biology [PDF]
Linguistic Frontiers, 2018 In this review, I have presented several topics relevant to the present state and to the future state of the scientific field that I propose to call sequence biology (SB). In some pertinent publications, this field was called DNA linguistics.
A. Bolshoy
semanticscholar +3 more sources
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence [PDF]
Nature, 1998 S. Cole +41 more
semanticscholar +2 more sources
More biology from the sequence. [PDF]
Genome Biology, 2001 A report on the Cold Spring Harbor meeting on Genome Sequencing and Biology, Cold Spring Harbor, NY, USA, 9-13 May 2001.
Martin S. Taylor
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Connecting Sequence and Biology in the Laboratory Mouse [PDF]
Genome Research, 2003 The Mouse Genome Sequencing Consortium and the RIKEN Genome Exploration Research grouphave generated large sets of sequence data representing the mouse genome and transcriptome, respectively. These data provide a valuable foundation for genomic research.
Richard M. Baldarelli +26 more
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The Multiple Sequence Alignment Problem in Biology [PDF]
SIAM Journal on Applied Mathematics, 1988 Summary: The study and comparison of sequences of characters from a finite alphabet is relevant to various areas of science, notably molecular biology. The measurement of sequence similarity involves the consideration of the different possible sequence alignments in order to find an optimal one for which the ``distance'' between sequences is minimum ...
Humberto Carrillo-Calvet +1 more
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The DNA sequence and biology of human chromosome 19 [PDF]
Nature, 2004 Chromosome 19 has the highest gene density of all human chromosomes, more than double the genome-wide average. The large clustered gene families, corresponding high G + C content, CpG islands and density of repetitive DNA indicate a chromosome rich in biological and evolutionary significance.
Jane Grimwood +97 more
openalex +4 more sources
Legume Biology: Sequence to Seeds [PDF]
Plant Physiology, 2007 Research on legumes is driven, to a large extent, by their importance as food crops worldwide. Some 25% of the world's major crop production is derived from legumes, and more than one-third of humanity's nutritional nitrogen requirement comes from legumes.
Mark R. O’Brian, Carroll P. Vance
openalex +5 more sources
Human Chromosome 7: DNA Sequence and Biology [PDF]
Science, 2003 DNA sequence and annotation of the entire human chromosome 7, encompassing nearly 158 million nucleotides of DNA and 1917 gene structures, are presented. To generate a higher order description, additional structural features such as imprinted genes, fragile sites, and segmental duplications were integrated at the level of the DNA sequence with medical ...
Stephen W. Scherer +89 more
openalex +9 more sources
Strainberry: automated strain separation in low-complexity metagenomes using long reads
Nature Communications, 2021 Existing long-read de novo assembly methods can partially, but not completely, separate strains. Here, the authors develop Strainberry, a metagenome assembly bioinformatic pipeline that exclusively uses longread data to accurately separate and ...
Riccardo Vicedomini +3 more
doaj +1 more source