Results 41 to 50 of about 4,125,791 (291)

Comparative and phylogenetic analysis of complete chloroplast genomes from seven Neocinnamomum taxa (Lauraceae)

Frontiers in Plant Science, 2023
The genus Neocinnamomum is considered to be one of the most enigmatic groups in Lauraceae, mainly distributed in tropical and subtropical regions of Southeast Asia. The genus contains valuable oilseed and medicinal tree species.
Zhengying Cao, Zhengying Cao, Linyi Yang, Yaxuan Xin, Yaxuan Xin, Wenbin Xu, Qishao Li, Qishao Li, Haorong Zhang, Haorong Zhang, Yuxiang Tu, Yuxiang Tu, Yu Song, Peiyao Xin, Peiyao Xin   +14 more
doaj   +1 more source

Race- and Isolate-specific Molecular Marker Development through Genome-Realignment Enables Detection of Korean Plasmodiophora brassicae Isolates, Causal agents of Clubroot Disease

The Plant Pathology Journal, 2018
Clubroot is one of the most economically important diseases of the Brassicaceae family. Clubroot disease is caused by the obligate parasite Plasmodiophora brassicae, which is difficult to study because it is non-culturable in the laboratory and its races
Ji -Yun Jeong, Arif Hasan Khan Robin, Sathishkumar Natarajan, Rawnak Laila, Hoy-Taek Kim, Jong-In Park, Ill-Sup Nou   +6 more
doaj   +1 more source

GSAlign: an efficient sequence alignment tool for intra-species genomes

BMC Genomics, 2020
Background Personal genomics and comparative genomics are becoming more important in clinical practice and genome research. Both fields require sequence alignment to discover sequence conservation and variation.
Hsin-Nan Lin, Wen-Lian Hsu
doaj   +1 more source

Comparison of DNA Sequences with Protein Sequences

Genomics, 1997
The FASTA package of sequence comparison programs has been expanded to include FASTX and FASTY, which compare a DNA sequence to a protein sequence database, translating the DNA sequence in three frames and aligning the translated DNA sequence to each sequence in the protein database, allowing gaps and frameshifts.
W R, Pearson, T, Wood, Z, Zhang, W, Miller   +3 more
openaire   +2 more sources

Secure outsourcing of sequence comparisons [PDF]

International Journal of Information Security, 2005
Large-scale problems in the physical and life sciences are being revolutionized by Internet computing technologies, like grid computing, that make possible the massive cooperative sharing of computational power, bandwidth, storage, and data. A weak computational device, once connected to such a grid, is no longer limited by its slow speed, small ...
Mikhail J. Atallah, Jiangtao Li
openaire   +1 more source

Integrating overlapping structures and background information of words significantly improves biological sequence comparison. [PDF]

PLoS ONE, 2011
Word-based models have achieved promising results in sequence comparison. However, as the important statistical properties of words in biological sequence, how to use the overlapping structures and background information of the words to improve sequence ...
Qi Dai, Lihua Li, Xiaoqing Liu, Yuhua Yao, Fukun Zhao, Michael Zhang   +5 more
doaj   +1 more source

Sequential Monte Carlo with transformations [PDF]

, 2019
This paper examines methodology for performing Bayesian inference sequentially on a sequence of posteriors on spaces of different dimensions.
Culliford, Richard, Everitt, Richard G., Medina-Aguayo, Felipe, Wilson, Daniel J.   +3 more
core   +3 more sources

Genomic Analysis of a Novel Torradovirus “Rehmannia Torradovirus Virus”: Two Distinct Variants Infecting Rehmannia glutinosa

Microorganisms
Rehmannia glutinosa, a crucial medicinal plant native to China, is extensively cultivated across East Asia. We used high-throughput sequencing to identify viruses infecting R. glutinosa with mosaic, leaf yellowing, and necrotic symptoms.
Yanhong Qin, Shuhao Lu, Yi Wen, Shaojian Li, Suxia Gao, Desheng Zhang, Xuemeng Li, Jin Yang, Li Gu, Mingjie Li, Fei Wang, Chuantao Lu   +11 more
doaj   +1 more source

Updating benchtop sequencing performance comparison [PDF]

Nature Biotechnology, 2013
In April 2012, your journal published a study by Loman et al.1 that systematically compared desktop next-generation sequencers (NGS) from three instrument providers. Using the custom scripts supplied by the authors, the same software and the same draft genome (with 153 remaining gaps within several scaffolds) as the reference, we reproduced ...
Jünemann, Sebastian, Sedlazeck, Fritz Joachim, Prior, Karola, Albersmeier, Andreas, John, Uwe, Kalinowski, Jörn, Mellmann, Alexander, Goesmann, Alexander, von Haeseler, Arndt, Stoye, Jens, Harmsen, Dag   +10 more
openaire   +3 more sources

A greedy alignment-free distance estimator for phylogenetic inference

BMC Bioinformatics, 2017
Background Alignment-free sequence comparison approaches have been garnering increasing interest in various data- and compute-intensive applications such as phylogenetic inference for large-scale sequences.
Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru   +4 more
doaj   +1 more source