Results 1 to 10 of about 74,278 (259)

Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds [PDF]

BMC Genomics, 2017
Background To date, genome-scale analyses in the domestic horse have been limited by suboptimal single nucleotide polymorphism (SNP) density and uneven genomic coverage of the current SNP genotyping arrays.
Robert J. Schaefer, Mikkel Schubert, Ernest Bailey, Danika L. Bannasch, Eric Barrey, Gila Kahila Bar-Gal, Gottfried Brem, Samantha A. Brooks, Ottmar Distl, Ruedi Fries, Carrie J. Finno, Vinzenz Gerber, Bianca Haase, Vidhya Jagannathan, Ted Kalbfleisch, Tosso Leeb, Gabriella Lindgren, Maria Susana Lopes, Núria Mach, Artur da Câmara Machado, James N. MacLeod, Annette McCoy, Julia Metzger, Cecilia Penedo, Sagi Polani, Stefan Rieder, Imke Tammen, Jens Tetens, Georg Thaller, Andrea Verini-Supplizi, Claire M. Wade, Barbara Wallner, Ludovic Orlando, James R. Mickelson, Molly E. McCue   +34 more
doaj   +2 more sources

Fine-scale assessment of ROH patterns and genomic inbreeding in diverse horse breeds using two SNP array densities [PDF]

BMC Veterinary Research
Background Inbreeding is caused by mating between related individuals and is associated with reduced fitness and performance. Generally, in the horse population, inbreeding is caused by geographically restricted areas and intensive natural or artificial ...
Moslem Moghbeli Damane, Ahmad Ayatollahi Mehrgardi, Ali Esmailizadeh, Mehdi Momen   +3 more
doaj   +2 more sources

Accuracy of genotype imputation of a low-density SNP array for the Amazon fish Colossoma macropomum [PDF]

Genetics and Molecular Biology
In South America, Tambaqui (Colossoma macropomum) stands as the primary target for aquaculture, yet breeding programs for this Amazon native species are in their early stages. While high-density single nucleotide polymorphism (SNP) arrays are pivotal for
John F. G. Agudelo, Vito A. Mastrochirico-Filho, Baltasar F. Garcia, Raquel B. Ariede, José M. Yáñez, Gustavo M. R. Valladão, Diogo T. Hashimoto   +6 more
doaj   +2 more sources

Assessing the clinical application value of SNP-array in fetal central nervous system malformations [PDF]

Human Genomics
Background Single nucleotide polymorphism array (SNP-array) has been introduced for prenatal diagnosis. This study aims to evaluate the clinical utility of SNP-array in the prenatal central nervous system (CNS) malformations.
Wei Li, Jiasun Su, Weiliang Lu, Xianglian Tang, Chaofan Zhou, Yueyun Lan, Yuan Wei, Limei Huang, Jingrong Luo, Shan Ou, Shuyin Tan, Shengkai Wei, Yaoyao Jiang, Jingyu Su, Liang Wang, Minpan Huang, Jingsi Luo, Peng Huang   +17 more
doaj   +2 more sources

Deducing genotypes for loci of interest from SNP array data via haplotype sharing, demonstrated for apple and cherry. [PDF]

PLoS ONE, 2023
Breeders, collection curators, and other germplasm users require genetic information, both genome-wide and locus-specific, to effectively manage their genetically diverse plant material.
Alexander Schaller, Stijn Vanderzande, Cameron Peace   +2 more
doaj   +2 more sources

Chromosomal quality control in hPSCs: A practical guide to SNP array analysis with GenomeStudio. [PDF]

Front Cell Dev Biol
Haake J, Steenpass L.
europepmc   +3 more sources

Genome-wide QTL mapping for agronomic traits in the winter wheat cultivar Pindong 34 based on 90K SNP array. [PDF]

Front Plant Sci
Zhang L, Luo Y, Zhong X, Jia G, Chen H, Wang Y, Zhou J, Ma C, Li X, Huang K, Yang S, Wang J, Han D, Ren Y, Cai L, Zhou X.   +15 more
europepmc   +3 more sources

Screening of biobank SNP-array genotyping data to detect Lynch syndrome predisposing MLH1 copy number variants. [PDF]

Fam Cancer
Ala-Kulju K, Carpén O, Lappalainen M, Pehrsson M.   +3 more
europepmc   +3 more sources

Rare copy number variant analysis in case-control studies using snp array data: a scalable and automated data analysis pipeline. [PDF]

BMC Bioinformatics
Artaza H, Lavrichenko K, Wolff ASB, Røyrvik EC, Vaudel M, Johansson S.   +5 more
europepmc   +3 more sources

Development and validation of a 66K SNP array for the hard clam (Mercenaria mercenaria). [PDF]

BMC Genomics
Grouzdev D, Farhat S, Guo X, Espinosa EP, Reece K, McDowell J, Yang H, Rivara G, Reitsma J, Clemetson A, Tanguy A, Allam B.   +11 more
europepmc   +2 more sources