Results 1 to 10 of about 1,520,842 (344)

The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. [PDF]

Sci Rep, 2020
Cherry breeding and genetic studies can benefit from genome-wide genetic marker assays. Currently, a 6K SNP array enables genome scans in cherry; however, only a third of these SNPs are informative, with low coverage in many genomic regions.
Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A, Peace C.   +7 more
europepmc   +5 more sources

Development and Evaluation of an Axiom^TM 60K SNP Array for Almond (Prunus dulcis). [PDF]

Plants (Basel), 2023
A high-density single nucleotide polymorphism (SNP) array is essential to enable faster progress in plant breeding for new cultivar development. In this regard, we have developed an Axiom 60K almond SNP array by resequencing 81 almond accessions. For the
Duval H, Coindre E, Ramos-Onsins SE, Alexiou KG, Rubio-Cabetas MJ, Martínez-García PJ, Wirthensohn M, Dhingra A, Samarina A, Arús P.   +9 more
europepmc   +2 more sources

Clinical Utility of SNP Array Analysis in Prenatal Diagnosis: A Cohort Study of 5000 Pregnancies

Frontiers in Genetics, 2020
BackgroundSingle nucleotide polymorphism array (SNP-array) has been introduced for prenatal diagnosis. We aimed to evaluate the clinical value of SNP-array in the diagnosis of fetal chromosomal anomalies.MethodsA retrospective study was conducted on 5000
Jingjing Xiang, Jingjing Xiang, Yang Ding, Yang Ding, Xiaoyan Song, Xiaoyan Song, Jun Mao, Jun Mao, Minjuan Liu, Minjuan Liu, Yinghua Liu, Yinghua Liu, Chao Huang, Chao Huang, Qin Zhang, Qin Zhang, Ting Wang, Ting Wang   +17 more
doaj   +2 more sources

Development of a High-Density 665 K SNP Array for Rainbow Trout Genome-Wide Genotyping. [PDF]

Front Genet, 2022
Single nucleotide polymorphism (SNP) arrays, also named « SNP chips », enable very large numbers of individuals to be genotyped at a targeted set of thousands of genome-wide identified markers.
Bernard M, Dehaullon A, Gao G, Paul K, Lagarde H, Charles M, Prchal M, Danon J, Jaffrelo L, Poncet C, Patrice P, Haffray P, Quillet E, Dupont-Nivet M, Palti Y, Lallias D, Phocas F.   +16 more
europepmc   +2 more sources

Integration of Infinium and Axiom SNP array data in the outcrossing species Malus × domestica and causes for seemingly incompatible calls

BMC Genomics, 2021
Background Single nucleotide polymorphism (SNP) array technology has been increasingly used to generate large quantities of SNP data for use in genetic studies.
Nicholas P. Howard, Michela Troggio, Charles-Eric Durel, Hélène Muranty, Caroline Denancé, Luca Bianco, John Tillman, Eric van de Weg   +7 more
doaj   +2 more sources

Development and Applications of a High Throughput Genotyping Tool for Polyploid Crops: Single Nucleotide Polymorphism (SNP) Array

Frontiers in Plant Science, 2018
Polypoid species play significant roles in agriculture and food production. Many crop species are polyploid, such as potato, wheat, strawberry, and sugarcane.
Qian You, Qian You, Xiping Yang, Ze Peng, Liping Xu, Jianping Wang, Jianping Wang, Jianping Wang   +7 more
doaj   +2 more sources

Development of a multi-species SNP array for serrasalmid fish Colossoma macropomum and Piaractus mesopotamicus. [PDF]

Sci Rep, 2021
Scarce genomic resources have limited the development of breeding programs for serrasalmid fish Colossoma macropomum (tambaqui) and Piaractus mesopotamicus (pacu), the key native freshwater fish species produced in South America.
Mastrochirico-Filho VA, Ariede RB, Freitas MV, Borges CHS, Lira LVG, Mendes NJ, Agudelo JFG, Cáceres P, Berrocal MHM, Sucerquia GAL, Porto-Foresti F, Yáñez JM, Hashimoto DT.   +12 more
europepmc   +2 more sources

Accuracy of genotype imputation of a low-density SNP array for the Amazon fish Colossoma macropomum [PDF]

Genetics and Molecular Biology
In South America, Tambaqui (Colossoma macropomum) stands as the primary target for aquaculture, yet breeding programs for this Amazon native species are in their early stages. While high-density single nucleotide polymorphism (SNP) arrays are pivotal for
John F. G. Agudelo, Vito A. Mastrochirico-Filho, Baltasar F. Garcia, Raquel B. Ariede, José M. Yáñez, Gustavo M. R. Valladão, Diogo T. Hashimoto   +6 more
doaj   +2 more sources

Deducing genotypes for loci of interest from SNP array data via haplotype sharing, demonstrated for apple and cherry. [PDF]

PLoS ONE, 2023
Breeders, collection curators, and other germplasm users require genetic information, both genome-wide and locus-specific, to effectively manage their genetically diverse plant material.
Alexander Schaller, Stijn Vanderzande, Cameron Peace   +2 more
doaj   +2 more sources

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications

Rice, 2017
Background Fixed arrays of single nucleotide polymorphism (SNP) markers have advantages over reduced representation sequencing in their ease of data analysis, consistently higher call rates, and rapid turnaround times.
Michael J. Thomson, Namrata Singh, Maria S. Dwiyanti, Diane R. Wang, Mark H. Wright, Francisco Agosto Perez, Genevieve DeClerck, Joong Hyoun Chin, Geraldine A. Malitic-Layaoen, Venice Margarette Juanillas, Christine J. Dilla-Ermita, Ramil Mauleon, Tobias Kretzschmar, Susan R. McCouch   +13 more
doaj   +2 more sources