SAQC: SNP Array Quality Control [PDF]
BMC Bioinformatics, 2011 Background Genome-wide single-nucleotide polymorphism (SNP) arrays containing hundreds of thousands of SNPs from the human genome have proven useful for studying important human genome questions.
Li Ling-Hui +8 more
doaj +3 more sources
An Axiom SNP genotyping array for Douglas-fir [PDF]
BMC Genomics, 2020 Background In forest trees, genetic markers have been used to understand the genetic architecture of natural populations, identify quantitative trait loci, infer gene function, and enhance tree breeding.
Glenn T. Howe +10 more
doaj +3 more sources
Fine-scale assessment of ROH patterns and genomic inbreeding in diverse horse breeds using two SNP array densities [PDF]
BMC Veterinary ResearchBackground Inbreeding is caused by mating between related individuals and is associated with reduced fitness and performance. Generally, in the horse population, inbreeding is caused by geographically restricted areas and intensive natural or artificial ...
Moslem Moghbeli Damane +3 more
doaj +2 more sources
Accuracy of genotype imputation of a low-density SNP array for the Amazon fish Colossoma macropomum [PDF]
Genetics and Molecular BiologyIn South America, Tambaqui (Colossoma macropomum) stands as the primary target for aquaculture, yet breeding programs for this Amazon native species are in their early stages. While high-density single nucleotide polymorphism (SNP) arrays are pivotal for
John F. G. Agudelo +6 more
doaj +2 more sources
Developing a 670k genotyping array to tag ~2M SNPs across 24 horse breeds [PDF]
BMC Genomics, 2017 Background To date, genome-scale analyses in the domestic horse have been limited by suboptimal single nucleotide polymorphism (SNP) density and uneven genomic coverage of the current SNP genotyping arrays.
Robert J. Schaefer +34 more
doaj +2 more sources
A new chicken 55K SNP genotyping array [PDF]
BMC Genomics, 2019 Background China has the richest local chicken breeding resources in the world and is the world’s second largest producer of meat-type chickens. Development of a moderate-density SNP array for genetic analysis of chickens and breeding of meat-type ...
Ranran Liu +8 more
doaj +3 more sources
How array design creates SNP ascertainment bias. [PDF]
PLoS ONE, 2021 Single nucleotide polymorphisms (SNPs), genotyped with arrays, have become a widely used marker type in population genetic analyses over the last 10 years.
Johannes Geibel +5 more
doaj +5 more sources
Development of
Molecular Ecology Resources, 2014 AbstractUse of SNPs has been favoured due to their abundance in plant and animal genomes, accompanied by the falling cost and rising throughput capacity for detection and genotyping. Here, we present in vitro (obtained from targeted sequencing) and in silico discovery of SNPs, and the design of medium‐throughput genotyping arrays for two oyster species,
Sylvie Lapègue +11 more
openalex +5 more sources
Assessing the clinical application value of SNP-array in fetal central nervous system malformations [PDF]
Human GenomicsBackground Single nucleotide polymorphism array (SNP-array) has been introduced for prenatal diagnosis. This study aims to evaluate the clinical utility of SNP-array in the prenatal central nervous system (CNS) malformations.
Wei Li +17 more
doaj +2 more sources
Deducing genotypes for loci of interest from SNP array data via haplotype sharing, demonstrated for apple and cherry. [PDF]
PLoS ONE, 2023 Breeders, collection curators, and other germplasm users require genetic information, both genome-wide and locus-specific, to effectively manage their genetically diverse plant material.
Alexander Schaller +2 more
doaj +2 more sources