SAQC: SNP Array Quality Control [PDF]
BMC Bioinformatics, 2011 Background Genome-wide single-nucleotide polymorphism (SNP) arrays containing hundreds of thousands of SNPs from the human genome have proven useful for studying important human genome questions.
Li Ling-Hui +8 more
doaj +4 more sources
How array design creates SNP ascertainment bias. [PDF]
PLoS ONE, 2021 Single nucleotide polymorphisms (SNPs), genotyped with arrays, have become a widely used marker type in population genetic analyses over the last 10 years.
Johannes Geibel +5 more
doaj +6 more sources
A SNP Genotyping Array for Hexaploid Oat [PDF]
The Plant Genome, 2014 Recognizing a need in cultivated hexaploid oat ( L.) for a reliable set of reference single nucleotide polymorphisms (SNPs), we have developed a 6000 (6K) BeadChip design containing 257 Infinium I and 5486 Infinium II designs corresponding to 5743 SNPs ...
Nicholas A. Tinker +9 more
doaj +2 more sources
An Axiom SNP genotyping array for Douglas-fir [PDF]
BMC Genomics, 2020 Background In forest trees, genetic markers have been used to understand the genetic architecture of natural populations, identify quantitative trait loci, infer gene function, and enhance tree breeding.
Glenn T. Howe +10 more
doaj +4 more sources
Development and Evaluation of a Barley 50k iSelect SNP Array [PDF]
Frontiers in Plant Science, 2017 High-throughput genotyping arrays continue to be an attractive, cost-effective alternative to sequencing based approaches. We have developed a new 50k Illumina Infinium iSelect genotyping array for barley, a cereal crop species of major international ...
M. Bayer +10 more
semanticscholar +5 more sources
Genome-wide SNP detection, validation, and development of an 8K SNP array for apple. [PDF]
PLoS ONE, 2012 As high-throughput genetic marker screening systems are essential for a range of genetics studies and plant breeding applications, the International RosBREED SNP Consortium (IRSC) has utilized the Illumina Infinium® II system to develop a medium- to high-
David Chagné +19 more
doaj +8 more sources
First reported TRIB1 copy number loss in myelodysplastic syndrome (MDS) revealed by single nucleotide polymorphism array (SNP-array) with patient-matched control [PDF]
Leukemia Research ReportsA 30-year-old woman with MDS with low blasts (MDS-LB) presented a somatic 67-kb copy number loss at 8q24.13 involving TRIB1, detected by single nucleotide polymorphism (SNP) array. Bone marrow analysis showed no mutations in common MDS genes (TP53, ASXL1,
Kun Chi, Lili Song
doaj +2 more sources
Development of a dense SNP-based linkage map of an apple rootstock progeny using the
BMC Genomics, 2012 Background A whole-genome genotyping array has previously been developed for Malus using SNP data from 28 Malus genotypes. This array offers the prospect of high throughput genotyping and linkage map development for any given Malus progeny.
Antanaviciute Laima +9 more
doaj +2 more sources
A new chicken 55K SNP genotyping array [PDF]
BMC Genomics, 2019 Background China has the richest local chicken breeding resources in the world and is the world’s second largest producer of meat-type chickens. Development of a moderate-density SNP array for genetic analysis of chickens and breeding of meat-type ...
Ranran Liu +8 more
doaj +4 more sources
A genotype calling algorithm for affymetrix SNP arrays [PDF]
Bioinformatics, 2005 Abstract Motivation: A classification algorithm, based on a multi-chip, multi-SNP approach is proposed for Affymetrix SNP arrays. Current procedures for calling genotypes on SNP arrays process all the features associated with one chip and one SNP at a time.
Nusrat Rabbee, Terence P. Speed
openalex +4 more sources