Results 21 to 30 of about 1,566,477 (261)
A genotype calling algorithm for affymetrix SNP arrays [PDF]
Bioinformatics, 2005 Abstract Motivation: A classification algorithm, based on a multi-chip, multi-SNP approach is proposed for Affymetrix SNP arrays. Current procedures for calling genotypes on SNP arrays process all the features associated with one chip and one SNP at a time.
Nusrat Rabbee, Terence P. Speed
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Comparing CNV detection methods for SNP arrays [PDF]
Briefings in Functional Genomics and Proteomics, 2009 Data from whole genome association studies can now be used for dual purposes, genotyping and copy number detection. In this review we discuss some of the methods for using SNP data to detect copy number events. We examine a number of algorithms designed to detect copy number changes through the use of signal-intensity data and consider methods to ...
Laura Winchester +2 more
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R Classes and Methods for SNP Array Data [PDF]
, 2009 The Bioconductor project is an "open source and open development software project for the analysis and comprehension of genomic data" (1), primarily based on the R programming language. Infrastructure packages, such as Biobase, are maintained by Bioconductor core developers and serve several key roles to the broader community of Bioconductor software ...
Robert B. Scharpf, Ingo Ruczinski
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Comparison of GenFlex Tag Array and Pyrosequencing in SNP Genotyping [PDF]
The Journal of Molecular Diagnostics, 2003 With the completion of the Human Genome Project, over 2 million sequence-verified single nucleotide polymorphisms (SNPs) have been deposited in public databases. The challenge has shifted from SNP identification to high-throughput SNP genotyping.
Daniel C. Chen +5 more
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SNP+ to predict dropout rates in SNP arrays
Conservation Genetics Resources, 2022 AbstractGenotyping individuals using forensic or non-invasive samples such as hair or fecal samples increases the risk of allelic amplification failure (dropout) due to the low quality and quantity of DNA. One way to decrease genotyping errors is to increase the number of replicates per sample.
Sastre Alaiz, Natalia +2 more
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TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples. [PDF]
PLoS ONE, 2015 Tumor single nucleotide polymorphism (SNP) array is a common platform for investigating the cancer genomic aberration and the functionally important altered genes.
Yuanning Liu +3 more
doaj +1 more source
Frontiers in Plant Science, 2021 Array-based single nucleotide polymorphism (SNP) genotyping platforms have low genotype error and missing data rates compared to genotyping-by-sequencing technologies.
Gabriel Keeble-Gagnère +14 more
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SNP Array in Hematopoietic Neoplasms: A Review [PDF]
Microarrays, 2015 Cytogenetic analysis is essential for the diagnosis and prognosis of hematopoietic neoplasms in current clinical practice. Many hematopoietic malignancies are characterized by structural chromosomal abnormalities such as specific translocations, inversions, deletions and/or numerical abnormalities that can be identified by karyotype analysis or ...
Haipeng Shao, Jinming Song
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Detection rates of abnormalities in over 10,000 amniotic fluid samples at a single laboratory
BMC Pregnancy and Childbirth, 2023 Background A growing number of cytogenetic techniques have been used for prenatal diagnosis. This study aimed to demonstrate the usefulness of karyotyping, BACs-on-Beads (BoBs) assay and single nucleotide polymorphism (SNP) array in prenatal diagnosis ...
Sha Lu +8 more
doaj +1 more source
Plant Biotechnology Journal, 2020 The rapid development and application of molecular marker assays have facilitated genomic selection and genome‐wide linkage and association studies in wheat breeding. Although PCR‐based markers (e.g.
Congwei Sun +5 more
semanticscholar +1 more source