Results 11 to 20 of about 691,412 (269)
Frontiers in Genetics, 2021 Long read sequencing technologies have the potential to accurately detect and phase variation in genomic regions that are difficult to fully characterize with conventional short read methods. These difficult to sequence regions include several clinically
Zachary Stephens +5 more
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Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Frontiers in Microbiology, 2020 Leaves and roots harbor taxonomically diverse bacterial assemblages which enhance plant growth and performance by increasing nutrient supply and resistance to stress. An extensive investigation of bacterial diversity and composition between leaf and root
Ying Zheng +3 more
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Evaluation of Germline Structural Variant Calling Methods for Nanopore Sequencing Data
Frontiers in Genetics, 2021 Structural variants (SVs) are genomic rearrangements that involve at least 50 nucleotides and are known to have a serious impact on human health. While prior short-read sequencing technologies have often proved inadequate for a comprehensive assessment ...
Davide Bolognini , Alberto Magi
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Understanding genome structural variations
Oncotarget, 2015 Genome structural variations (SVs) in the human genome are defined as DNA sequence polymorphisms of at least a few dozen or few hundred bases in length and include deletions, duplications, inversions, translocation, retroelement insertions, and more complex rearrangements that could be thought of as consisting of multiple fragments from the just listed
Abyzov, Alexej +2 more
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Frontiers in Plant Science, 2022 The weedy rice (Oryza sativa f. spontanea) harbors large numbers of excellent traits and genetic diversities, which serves as a valuable germplasm resource and has been considered as a typical material for research about de-domestication.
Jie Ma +10 more
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Guangxi Zhiwu, 2023 Rhododendron capitatum and R. przewalskii are ornamental flowers and medicinal plants. The chloroplast genomes of R. capitatum and R. przewalskii have been sequenced using Illumina HiSeq 4000 platform to explore the genetic structure and evolution ...
Shouning JIA +4 more
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QUANTIFYING PHYLOGENETICALLY STRUCTURED ENVIRONMENTAL VARIATION [PDF]
Evolution, 2003 Comparative analysis methods control for the variation linked to phylogeny before attempting to correlate the remaining variation of a trait to present-day conditions (i.e., ecology and/or environment). A portion of the phylogenetic variation of the trait may be related to ecology, however; this portion is called "phylogenetic niche conservatism." We ...
Yves, Desdevises +3 more
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Evolutionary Applications, 2022 Structural variations (SVs) are important DNA polymorphisms that contribute to genetic diversity and evolution in humans, animals, and plants. In this study, we present a novel swine SV dataset of 79,919 deletions, 23,638 duplications, and 9333 ...
Huanfa Gong +10 more
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SIns: A Novel Insertion Detection Approach Based on Soft-Clipped Reads
Frontiers in Genetics, 2021 As a common type of structural variation, an insertion refers to the addition of a DNA sequence into an individual genome and is usually associated with some inherited diseases.
Chaokun Yan +5 more
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Visualizing Population Structure with Variational Autoencoders [PDF]
G3 Genes|Genomes|Genetics, 2020 AbstractDimensionality reduction is a common tool for visualization and inference of population structure from genotypes, but popular methods either return too many dimensions for easy plotting (PCA) or fail to preserve global geometry (t-SNE and UMAP).
C J Battey +2 more
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