Results 31 to 40 of about 106,785 (200)
Counting short tandem repeats [PDF]
Nature Methods, 2020 A method using CRISPR–Cas technology, nanopore sequencing and bioinformatics enables quantification of short tandem repeats with high accuracy.
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Tools for the identification of variable and potentially variable tandem repeats
BMC Genomics, 2006 Background Tandem repeat arrays showing variation between sequences within a population, between strains or across species may have functional effects. The increasing availability of genomic sequence data makes routine description of observed variation ...
Shields Denis C, O'Dushlaine Colm T
doaj +1 more source
G3: Genes, Genomes, Genetics, 2021 Tandem repeats are inherently unstable and exhibit extensive copy number polymorphisms. Despite mounting evidence for their adaptive potential, the mechanisms associated with regulation of the stability and copy number of tandem repeats remain largely ...
Devika Salim +3 more
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TRAL: tandem repeat annotation library [PDF]
Bioinformatics, 2015 Abstract Motivation: Currently, more than 40 sequence tandem repeat detectors are published, providing heterogeneous, partly complementary, partly conflicting results. Results: We present TRAL, a tandem repeat annotation library that allows running and parsing of various detection outputs, clustering of redundant or ...
Elke Schaper +8 more
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Condensin Promotes Position Effects within Tandem DNA Repeats via the RITS Complex
Cell Reports, 2016 Summary: Tandem repetitive DNA is highly abundant in eukaryotic genomes and contributes to transcription control and genome stability. However, how the individual sequences within tandem repeats behave remains largely unknown.
Haijin He +4 more
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G3: Genes, Genomes, Genetics, 2021 Simple sequence tandem repeats are among the most rapidly evolving compartments of the genome. Some repeat expansions are associated with mammalian disease or meiotic segregation distortion, yet the rates of copy number change across generations are not ...
Jullien M Flynn +2 more
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TROLL—Tandem Repeat Occurrence Locator [PDF]
Bioinformatics, 2002 Abstract Summary: Tandem Repeat Occurrence Locator (TROLL), is a light-weight Simple Sequence Repeat (SSR) finder based on a slight modification of the Aho–Corasick algorithm. It is fast and only requires a standard Personal Computer (PC) to operate.
Adalberto T. Castelo +2 more
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In Silico Retrieving of Opium Poppy (Papaver Somniferum L.) Microsatellites
Agriculture, 2015 Repetitive tandem sequences were retrieved within nucleotide sequences of opium poppy (Papaver somniferum L.) genomic DNA available in the GenBank® database.
Masárová Veronika +2 more
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Frontiers in Genetics, 2022 Previous studies have demonstrated that TRIB3 is closely related to insulin resistance, metabolic disorders and vascular diseases. Recently, it was reported that a 33 bp variable number of tandem repeats (VNTR) located in the TRIB3 promoter could ...
Jiaqi Lai +13 more
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A fast and effective approach for the detection of units in tandem repeat proteins [PDF]
, 2022 openA fast and effective approach for the detection of units in tandem repeat proteinsA fast and effective approach for the detection of units in tandem repeat ...
COCCO, ALBERTO
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