Results 41 to 50 of about 106,785 (200)

Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages

Viruses, 2019
The human gut contains an expanse of largely unstudied bacteriophages. Among the most common are crAss-like phages, which were predicted to infect Bacteriodetes hosts. CrAssphage, the first crAss-like phage to be discovered, contains a protein encoding a
Patrick A. de Jonge, F. A. Bastiaan von Meijenfeldt, Laura E. van Rooijen, Stan J. J. Brouns, Bas E. Dutilh   +4 more
doaj   +1 more source

Short Tandem Repeats genotyping results.

, 2023
All short tandem repeats polymorphic variants called from examined cyclophilin locus from TRACI WGS, TRACII WGS, and TRACII AmpliSeq datasets. (XLSX)
Rob W. van der Pluijm (6390596), Christina Assisi (14504886), Olivo Miotto (36337), Michal Kucharski (4383256), Josephine Boentoro (14504880), Arjen M. Dondorp (7305212), Jerzy Michal Dziekan (14504883), Sachel Mok (258479), Zbynek Bozdech (1561), Grennady Wirjanata (106259), Sourav Nayak (9263105)   +10 more
core   +1 more source

ProRepeat: an integrated repository for studying amino acid tandem repeats in proteins

, 2011
ProRepeat (http://prorepeat.bioinformatics.nl/) is an integrated curated repository and analysis platform for in-depth research on the biological characteristics of amino acid tandem repeats.
Harm Nijveen, Lin, K., Jack A. M. Leunissen, K. Lin, Audrey David, Luo, H., Ke Lin, A. David, David, A., H. Nijveen, H. Luo, Leunissen, J.A.M., Nijveen, H., Hong Luo, J. A. M. Leunissen   +14 more
core   +1 more source

Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae)

Frontiers in Plant Science, 2021
The unigeneric tribe Heliophileae encompassing more than 100 Heliophila species is morphologically the most diverse Brassicaceae lineage. The tribe is endemic to southern Africa, confined chiefly to the southwestern South Africa, home of two biodiversity
Mert Dogan, Mert Dogan, Milan Pouch, Milan Pouch, Terezie Mandáková, Terezie Mandáková, Petra Hloušková, Xinyi Guo, Pieter Winter, Zuzana Chumová, Adriaan Van Niekerk, Klaus Mummenhoff, Ihsan A. Al-Shehbaz, Ladislav Mucina, Ladislav Mucina, Martin A. Lysak, Martin A. Lysak   +16 more
doaj   +1 more source

Linear time algorithms for finding and representing all the tandem repeats in a string

, 2004
Gusfield D, Stoye J. Linear time algorithms for finding and representing all the tandem repeats in a string. Journal of computer and system sciences. 2004;69(4):525-546.A tandem repeat (or square) is a string [alpha][alpha], where [alpha] is a non-empty ...
Stoye, Jens, Stoye, Jens ; https://orcid.org/, Gusfield, Dan   +2 more
core   +1 more source

A tandem repeat gene in a picornavirus

Nucleic Acids Research, 1982
Three closely related genes for the small genome-linked protein (VPg) of picornaviruses have been identified by sequence analysis as a tandem repeat in the genome of Foot and Mouth Disease Virus (FMDV), strain O1K. This unusual structure was also found in the genome of strain C1O, belonging to a different FMDV serotype. Predicted biochemical properties
S, Forss, H, Schaller
openaire   +3 more sources

Simple and flexible detection of contiguous repeats using a suffix tree

, 2002
Stoye J, Gusfield D. Simple and flexible detection of contiguous repeats using a suffix tree. Theoretical Computer Science. 2002;270(1-2):843-856.We study the problem of detecting all occurrences of (primitive) tandem repeats and tandem arrays in a ...
Jens Stoye, Stoye, Jens, Stoye, Jens ; https://orcid.org/, Gusfield, Dan, Dan Gusfield   +4 more
core   +1 more source

Fuzzy tandem repeats containing p53 response elements may define species-specific p53 target genes. [PDF]

PLoS Genetics, 2012
Evolutionary forces that shape regulatory networks remain poorly understood. In mammals, the Rb pathway is a classic example of species-specific gene regulation, as a germline mutation in one Rb allele promotes retinoblastoma in humans, but not in mice ...
Iva Simeonova, Vincent Lejour, Boris Bardot, Rachida Bouarich-Bourimi, Aurélie Morin, Ming Fang, Laure Charbonnier, Franck Toledo   +7 more
doaj   +1 more source

Tandem repeat copy-number variation in protein-coding regions of human genes

, 2005
BACKGROUND: Tandem repeat variation in protein-coding regions will alter protein length and may introduce frameshifts. Tandem repeat variants are associated with variation in pathogenicity in bacteria and with human disease.
O'Dushlaine, Colm T., Edwards, Richard, Park, Stephen D., Richard J Edwards, Colm T O'Dushlaine, Denis C Shields, Shields, Denis C., Stephen D Park   +7 more
core   +1 more source

Structural variants and tandem repeats in the founder individuals of four F2 pig crosses and implications to F2 GWAS results

BMC Genomics, 2022
Background Structural variants and tandem repeats are relevant sources of genomic variation that are not routinely analyzed in genome wide association studies mainly due to challenging identification and genotyping.
Iulia Blaj, Jens Tetens, Jörn Bennewitz, Georg Thaller, Clemens Falker-Gieske   +4 more
doaj   +1 more source