A new multi locus variable number of tandem repeat analysis scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wilt on banana and enset [PDF]
, 2019 Xanthomonas vasicola pv. musacearum (Xvm) which causes Xanthomonas wilt (XW) on banana (Musa accuminata x balbisiana) and enset (Ensete ventricosum), is closely related to the species Xanthomonas vasicola that contains the pathovars vasculorum (Xvv) and ...
Blondin, Laurence +6 more
core +4 more sources
Multiple Locus Variable number of tandem repeat Analysis : a molecular genotyping tool for Paenibacillus larvae [PDF]
, 2016 American Foulbrood, caused by Paenibacillus larvae, is the most severe bacterial disease of honey bees (Apis mellifera). To perform genotyping of P.larvae in an epidemiological context, there is a need of a fast and cheap method with a high resolution ...
Alippi +40 more
core +2 more sources
Evolution of Tandem Repeats Is Mirroring Post-polyploid Cladogenesis in Heliophila (Brassicaceae)
Frontiers in Plant Science, 2021 The unigeneric tribe Heliophileae encompassing more than 100 Heliophila species is morphologically the most diverse Brassicaceae lineage. The tribe is endemic to southern Africa, confined chiefly to the southwestern South Africa, home of two biodiversity
Mert Dogan +16 more
doaj +1 more source
Transposable Elements Are a Significant Contributor to Tandem Repeats in the Human Genome [PDF]
, 2012 Sequence repeats are an important phenomenon in the human genome, playing important roles in genomic alteration often with phenotypic consequences.
Ahmed, Musaddeque, Liang, Ping
core +4 more sources
Impact of Tandem Repeats on the Scaling of Nucleotide Sequences
, 2005 Techniques such as detrended fluctuation analysis (DFA) and its extensions have been widely used to determine the nature of scaling in nucleotide sequences.
Bashir R. +4 more
core +1 more source
Host plant-dependent phenotypic reversion of Ralstonia solanacearum from non-pathogenic to pathogenic forms via alterations in the phcA gene [PDF]
, 2003 Ralstonia solanacearum is a plant pathogenic bacterium that undergoes a spontaneous phenotypic conversion (PC) from a wild-type pathogenic to a non-pathogenic form.
Arlat, Mathieu +6 more
core +1 more source
Fuzzy tandem repeats containing p53 response elements may define species-specific p53 target genes. [PDF]
PLoS Genetics, 2012 Evolutionary forces that shape regulatory networks remain poorly understood. In mammals, the Rb pathway is a classic example of species-specific gene regulation, as a germline mutation in one Rb allele promotes retinoblastoma in humans, but not in mice ...
Iva Simeonova +7 more
doaj +1 more source
Complete mitochondrial genomes of four entomopathogenic nematode species of the genus Steinernema [PDF]
, 2016 Codon usage frequencies in the four Steinernema mitochondrial genomes. Table S2. Tandem repeats in large non-coding regions (>Â 1Â kb) in S. glaseri and S. litorale.
00354126 +8 more
core +2 more sources
Tau acetylation at K331 has limited impact on tau pathology in vivo
FEBS Letters, EarlyView.We mapped tau post‐translational modifications in humanized MAPT knock‐in mice and in amyloid‐bearing double knock‐in mice. Acetylation within the repeat domain, particularly around K331, showed modest increases under amyloid pathology. To test functional relevance, we generated MAPTK331Q knock‐in mice.
Shoko Hashimoto +3 more
wiley +1 more source
BMC Genomics, 2022 Background Structural variants and tandem repeats are relevant sources of genomic variation that are not routinely analyzed in genome wide association studies mainly due to challenging identification and genotyping.
Iulia Blaj +4 more
doaj +1 more source