Results 141 to 150 of about 33,188 (253)

Effects of applying Trichoderma asperellum to rice (Oryza sativa) on phytobiome and plant responses

Annals of Applied Biology, Volume 189, Issue 1, July 2026.
We investigated the effect of dipping at transplanting or post‐transplanting spray application on the root‐associated microbiome or leaf epiphytes via amplicon sequencing, and on plant responses via RNA‐seq. Both root dipping and foliar application with Trichoderma asperellum spore suspension only had a limited impact on the leaf epiphytes and root ...
Greg Deakin, Georgina Fagg, Tom Passey, Louisa Robinson‐Boyer, Xiangming Xu   +4 more
wiley   +1 more source

Optic nerve sheath meningioma exhibits neural niche‐associated transcriptomic features and rare copy number variation‐linked evolution

Brain Pathology, Volume 36, Issue 4, July 2026.
Optic nerve sheath meningiomas are typically NF2‐intact with few copy number alterations and are generally clinically indolent. Rare aggressive recurrences are associated with progressive accumulation of copy number variations, including CDKN2A/B homozygous deletion, 1q gain, and 14q loss.
Daisuke Sato, Satoru Miyawaki, Yu Sakai, Kenta Ohara, Yu Teranishi, Yudai Hirano, Motoyuki Umekawa, Takahiro Tsuchiya, Shotaro Ogawa, So Hirata, Hiroki Hongo, Hideaki Ono, Daisuke Komura, Tetsuo Ushiku, Shumpei Ishikawa, Nobuhito Saito   +15 more
wiley   +1 more source

NOVAGene: a nonlinear approach to improve biological resolution in weighted gene co-expression networks for low-variability datasets. [PDF]

Front Bioinform
Bacong JRC, Nevado JJB, Alejandria MM, Salamat MSS, Buensalido JAL.   +4 more
europepmc   +1 more source

Dynamic Landscapes of Long Noncoding RNAs During Early Root Development and Differentiation in Glycine max and Glycine soja

Plant, Cell &Environment, Volume 49, Issue 7, Page 3612-3625, July 2026.
ABSTRACT Soybean (Glycine max) is an important crop for its nutritional value. Its wild relative, Glycine soja, provides a valuable genetic resource for improving soybean productivity. Root development and differentiation are essential for soybean plants to take up water and nutrients, store energy and anchor themselves.
Qiaoxia Liang, Hafiz M. Rehman, Jizhou Zhang, Hon‐Ming Lam, Ting‐Fung Chan   +4 more
wiley   +1 more source

Transcriptional network analysis of PTEN‐protein‐deficient prostate tumors reveals robust stromal reprogramming and signs of senescent paracrine communication

Molecular Oncology, Volume 20, Issue 6, Page 1429-1452, June 2026.
Combining PTEN protein assessment and transcriptomic profiling of prostate tumors, we uncovered a network enriched in senescence and extracellular matrix (ECM) programs associated with PTEN loss and conserved in a mouse model. We show that PTEN‐deficient cells trigger paracrine remodeling of the surrounding stroma and this information could help ...
Ivana Rondon‐Lorefice, Jose I. Lopez, Aitziber Ugalde‐Olano, Maite Zufiaurre, Ianire Astobiza, Natalia Martin‐Martin, Laura Bozal‐Basterra, Saioa Garcia‐Longarte, Amaia Zabala‐Letona, Sofia Rey, Aida Santos‐Martin, Miguel Unda, Ana Loizaga‐Iriarte, Mariona Graupera, Paolo Nuciforo, Arkaitz Carracedo, Isabel Mendizabal   +16 more
wiley   +1 more source

From microbial diversity to functional potential using dimensionality reduction. [PDF]

Front Microbiol
Chamberlain EJ, Boulton W, Connors E, Calianos T, Bowman JS, Creamean JM, Mock T, Kim HH.   +7 more
europepmc   +1 more source

Liver Kinase B1 in CD11c+ Cells Inhibits Fibrosis in Chronic Pancreatitis via the Oncostatin M Signaling

Advanced Science, Volume 13, Issue 32, 9 June 2026.
This study demonstrates significantly reduced Lkb1 expression in CD11c+ cells in chronic pancreatitis (CP) patients and animal models. Lkb1 deletion enhances CD11c+CD206+ macrophage infiltration and reprograms pancreatic stellate cells (PSCs) via OSM signaling.
Wenqing Zhang, Shan Guo, Yu Zhang, He Ren, Ke Lei, Chenyang Zhao, Qian Yu, Hongqing Luo, Yujing Xiao, Xiaoming Feng, Xiaoyu Li   +10 more
wiley   +1 more source

Identification of RUNX1 as a Biomarker for Right Ventricular Remodeling in Pulmonary Arterial Hypertension Using WGCNA. [PDF]

Pulm Circ
Chen W, Peng M, Chen Y, Luo J, Chen J, Qiu H, Li J.   +6 more
europepmc   +1 more source

Single‐Cell RNA Sequencing Informs Precision Targeting of Monogenic Lupus Associated With IKZF1 Haploinsufficiency

Arthritis &Rheumatology, Volume 78, Issue 6, Page 1231-1244, June 2026.
Objective This study aimed to investigate the mechanisms of immune dysregulation in a pediatric patient with monogenic lupus driven by IKZF1 haploinsufficiency. Methods Peripheral immune cells from a patient with IKZF1 haploinsufficiency, patients with lupus with no currently known genetic mutations, and healthy controls were analyzed using single‐cell
Qi Zheng, Yejun Tan, Zhaoling Wang, Yanjie Qian, Qian Ma, Danping Shen, Meiping Lu   +6 more
wiley   +1 more source

Nested co-expression network analysis identifies compact gene clusters in a black box. [PDF]

Bioinformatics
Dyugay IA, Poslavsky A, Lukyanov DK, Polyakov FM, Nikitin E, Klimuk E, Dakhnovets A, Syrko DS, Kotliar VV, Chudakov DM.   +9 more
europepmc   +1 more source