Results 31 to 40 of about 1,163 (164)

Results of 27 A. baumannii according to whole-genome multilocus sequence typing (wgMLST).

, 2022
Results of the wgMLST of colistin-resistant A. baumannii strains showed two major clusters.
Hae-Sun Chung (11720781), Miae Lee (2713264), Chorong Hahm (12197279)   +2 more
core   +1 more source

cano-wgMLST_BacCompare: A Bacterial Genome Analysis Platform for Epidemiological Investigation and Comparative Genomic Analysis

Frontiers in Microbiology, 2019
With the decreasing cost of next-generation sequencing, whole-genome sequence-based bacterial genome comparisons are expected to become a mainstream process in the public health domain.
Yen-Yi Liu, Ji-Wei Lin, Chih-Chieh Chen, Chih-Chieh Chen   +3 more
doaj   +1 more source

Escherichia coli O121 outbreak associated with raw milk Gouda-like cheese in British Columbia, Canada, 2018

Canada Communicable Disease Report, 2021
Background: In 2018, a Shiga toxin–producing Escherichia coli O121 outbreak that affected seven individuals was associated with raw milk Gouda-like cheese produced in British Columbia, Canada. Objectives: To describe the E.
Eva Boyd, Aljosa Trmcic, Marsha Taylor, Sion Shyng, Paul Hasselback, Stephanie Man, Christine Tchao, Jason Stone, Loretta Janz, Linda Hoang, Eleni Galanis   +10 more
doaj   +1 more source

A pseudo-outbreak of MRSA due to laboratory contamination related to MRSA carriage of a laboratory staff member

Antimicrobial Resistance and Infection Control, 2023
Background Methicillin resistant Staphylococcus aureus (MRSA) is a major burden for hospitals globally. However, in the Netherlands, the MRSA prevalence is relatively low due to the ‘search and destroy’ policy.
Karlijn M. G. Houkes, Joep J. J. M. Stohr, Karin B. Gast, Karen Couderé, Veronica Weterings, Anne Mutsaers - van Oudheusden, Anton G. M. Buiting, Jaco J. Verweij   +7 more
doaj   +1 more source

Minimum spanning tree of the wgMLST allelic profiles for Salmonella Senftenberg isolates (n = 106) using Ridom SeqSphere⁺.

, 2021
Distance based on wgMLST typing of 3,891 common loci (3,591 core genes and 300 accessory genes) using the parameters “pairwise ignoring missing values” during calculation. Isolates with 0 allele difference are found in the same node.
James B. Pettengill (8610858), Gordon R. Davidson (11648761), Rohan Tikekar (11648773), Nathan Anderson (540525), Elizabeth Reed (3138513), Tyann Blessington (11648764), Julie Haendiges (5194592), Padmini Ramachandran (3138507), Sam Myoda (11648770), Jesse D. Miller (11648767), Eric W. Brown (8610855), Jie Zheng (31208), Maria Hoffmann (720254)   +12 more
core   +1 more source

Minimum spanning tree of the wgMLST allelic profiles for Salmonella Montevideo isolates (n = 95) using Ridom SeqSphere⁺.

, 2021
Distance based on wgMLST typing of 3,876 common loci (3,634 core genes and 242 accessory genes) using the parameters “pairwise ignoring missing values” during calculation. Isolates with 0 allele difference are found in the same node.
James B. Pettengill (8610858), Gordon R. Davidson (11648761), Rohan Tikekar (11648773), Nathan Anderson (540525), Elizabeth Reed (3138513), Tyann Blessington (11648764), Julie Haendiges (5194592), Padmini Ramachandran (3138507), Sam Myoda (11648770), Jesse D. Miller (11648767), Eric W. Brown (8610855), Jie Zheng (31208), Maria Hoffmann (720254)   +12 more
core   +1 more source

Antimicrobial susceptibility testing and successful treatment of hospitalised patients with extensively drug-resistant Campylobacter jejuni infections linked to a pet store puppy outbreak

Journal of Global Antimicrobial Resistance, 2021
Objectives: Most patients with Campylobacter infection do not require antibiotics; however, they are indicated in severe cases. Clinical breakpoints for many antibiotics are not yet established by the CLSI, making antibiotic selection for resistant ...
Dheeraj Goyal, Louise K. Francois Watkins, Martha P. Montgomery, Sonya M. Bodeis Jones, Hayat Caidi, Cindy R. Friedman   +5 more
doaj   +1 more source

Livestock-associated methicillin-resistant Staphylococcus aureus epidemiology, genetic diversity, and clinical characteristics in an urban region

Frontiers in Microbiology, 2022
ObjectivesWhile Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA), defined as CC398, is a well-known pathogen among those working with livestock, there are indications that LA-MRSA prevalence among the general population is ...
Maria M. Konstantinovski, Maria M. Konstantinovski, Leo M. Schouls, Sandra Witteveen, Eric C. J. Claas, Margriet E. Kraakman, Jayant Kalpoe, Eva Mattson, David J. Hetem, Erika P. M. van Elzakker, Jos Kerremans, Vishal Hira, Thijs Bosch, Jairo Gooskens   +13 more
doaj   +1 more source

Core/Whole Genome Multilocus Sequence Typing and Core Genome SNP-Based Typing of OXA-48-Producing Klebsiella pneumoniae Clinical Isolates From Spain

Frontiers in Microbiology, 2020
Whole-genome sequencing (WGS)-based typing methods have emerged as promising and highly discriminative epidemiological tools. In this study, we combined gene-by-gene allele calling and core genome single nucleotide polymorphism (cgSNP) approaches to ...
Elisenda Miro, John W. A. Rossen, John W. A. Rossen, Monika A. Chlebowicz, Dag Harmsen, Sylvain Brisse, Virginie Passet, Ferran Navarro, Alex W. Friedrich, S. García-Cobos   +9 more
doaj   +1 more source

A Simple and Robust Statistical Method to Define Genetic Relatedness of Samples Related to Outbreaks at the Genomic Scale – Application to Retrospective Salmonella Foodborne Outbreak Investigations

Frontiers in Microbiology, 2019
The investigation of foodborne outbreaks (FBOs) from genomic data typically relies on inspecting the relatedness of samples through a phylogenomic tree computed on either SNPs, genes, kmers, or alleles (i.e., cgMLST and wgMLST).
Nicolas Radomski, Sabrina Cadel-Six, Emeline Cherchame, Arnaud Felten, Pauline Barbet, Federica Palma, Ludovic Mallet, Simon Le Hello, François-Xavier Weill, Laurent Guillier, Michel-Yves Mistou   +10 more
doaj   +1 more source