Results 51 to 60 of about 1,163 (164)

Whole Genome Multi-Locus Sequence Typing and Genomic Single Nucleotide Polymorphism Analysis for Epidemiological Typing of Pseudomonas aeruginosa From Indonesian Intensive Care Units

Frontiers in Microbiology, 2022
We have previously studied carbapenem non-susceptible Pseudomonas aeruginosa (CNPA) strains from intensive care units (ICUs) in a referral hospital in Jakarta, Indonesia (Pelegrin et al., 2019).
Manisha Goyal, Andreu Coello Pelegrin, Magali Jaillard, Yulia Rosa Saharman, Yulia Rosa Saharman, Corné H. W. Klaassen, Henri A. Verbrugh, Juliëtte A. Severin, Alex van Belkum   +8 more
doaj   +1 more source

Whole-Genome Multilocus Sequence Typing of Extended-Spectrum-Beta-Lactamase-Producing Enterobacteriaceae [PDF]

, 2016
Molecular typing has become indispensable in the detection of nosocomial transmission of bacterial pathogens and the identification of sources and routes of transmission in outbreak settings, but current methods are labor-intensive, are difficult to ...
Vandenbroucke-Grauls, Christina M J E, Kluytmans, Jan A.J.W., Bruijning-Verhagen, Patricia C J, Friedrich, Alexander W., Kluytmans-Van Den Bergh, Marjolein F Q, Willems, Rob J L, Kluytmans, Jan A J W, Bonten, Marc J. M., Kluytmans-van den Bergh, Marjolein F. Q., Willems, Rob J. L., Kluytmans, Jan A. J. W., Rossen, John W. A., Vandenbroucke-Grauls, Christina M. J. E., Friedrich, Alexander W, Bonten, Marc J M, Rossen, John W. A.; id_orcid, Bruijning-Verhagen, Patricia C. J., Rossen, John W A   +17 more
core   +3 more sources

Table_2_Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA.XLSX

, 2023
Salmonella enterica is a leading cause of bacterial foodborne and zoonotic illnesses in the United States. For this study, we applied four different whole genome sequencing (WGS)-based subtyping methods: high quality single-nucleotide polymorphism (hqSNP)
Molly M. Leeper (17019252), Eshaw Vidyaprakash (17019258), Taylor Griswold (13411444), Beth M. Tolar (17019255), Kelley B. Hise (17019261), Grant M. Williams (17019264), Sung B. Im (11556712), Heather A. Carleton (11556721), Jessica C. Chen (6167159), Hannes Pouseele (17019267)   +9 more
core   +1 more source

Genomic Epidemiology of Campylobacter jejuni Transmission in Israel

Frontiers in Microbiology, 2018
Objectives:Campylobacter jejuni is responsible for 80% of Campylobacter infections in Israel, a country with a high incidence reaching 91/100,000 population.
Assaf Rokney, Lea Valinsky, Jacob Moran-Gilad, Jacob Moran-Gilad, Jacob Moran-Gilad, Katleen Vranckx, Vered Agmon, Miriam Weinberger, Miriam Weinberger   +8 more
doaj   +1 more source

Table_6_Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA.XLSX

, 2023
Salmonella enterica is a leading cause of bacterial foodborne and zoonotic illnesses in the United States. For this study, we applied four different whole genome sequencing (WGS)-based subtyping methods: high quality single-nucleotide polymorphism (hqSNP)
Eshaw Vidyaprakash (17019258), Eshaw Vidyaprakash, Taylor Griswold, Beth M. Tolar, Sung B. Im (11556712), Grant M. Williams, Hannes Pouseele, Molly M. Leeper, Hannes Pouseele (17019267), Jessica C. Chen, Molly M. Leeper (17019252), Taylor Griswold (13411444), Beth M. Tolar (17019255), Kelley B. Hise (17019261), Grant M. Williams (17019264), Heather A. Carleton, Kelley B. Hise, Heather A. Carleton (11556721), Jessica C. Chen (6167159), Sung B. Im   +19 more
core   +1 more source

Genome–scale approach to study the genetic relatedness among Brucella melitensis strains - wgMLST schema for Brucella melitensis

, 2019
wgMLST schema for Brucella melitensis   Schema creation The wgMLST schema was created using the 60 complete genomes of Brucella melitensis available at NCBI, as of January 2019, with the chewBBACA v2.0.11 suite (https://github.com/B-UMMI/chewBBACA ...
Núncio, MS (8125448), Pelerito, Ana (8125442), Gomes, JP (8125451), Pelerito, Ana, Nunes, Alexandra, Gomes, JP, Nunes, Alexandra (8125445), Núncio, MS   +7 more
core   +1 more source

Analysis of Virulence Genes and Antibiotic‐Resistant Profiles of Campylobacter in Huzhou, China

Canadian Journal of Infectious Diseases and Medical Microbiology, Volume 2026, Issue 1, 2026.
Background Campylobacter is the leading bacterial cause of diarrheal illnesses worldwide. Campylobacter jejuni and Campylobacter coli are the main pathogens of Campylobacter infections. Drug‐resistant Campylobacter has been classified as a serious antibiotic resistance threat. Methods From 2021 to 2022, 68 Campylobacter were isolated from fecal samples
Xiaofang Wu, Fenfen Dong, Zhonghao Lu, Lei Ji, Liping Chen, Satabdi Datta Choudhury   +5 more
wiley   +1 more source

wgMLST of S. flexneri strains.

, 2019
wgMLST based minimum spanning tree of 733 strains is shown. Clusters of strains, as identified in Pathogen detection are shaded (grey) and denoted by capital letters each representing a SNP cluster number: PDS00006028.119 (A), PDS000044321.1 (B ...
Analía V. Ezernitchi (7517372), Assaf Rokney (25133), Dana Danino (7517378), Vered Agmon (386623), Elizabeta Sirotkin (7517375), Lea Valinsky (311306)   +5 more
core   +1 more source

Table_5_Evaluation of whole and core genome multilocus sequence typing allele schemes for Salmonella enterica outbreak detection in a national surveillance network, PulseNet USA.XLSX

, 2023
Salmonella enterica is a leading cause of bacterial foodborne and zoonotic illnesses in the United States. For this study, we applied four different whole genome sequencing (WGS)-based subtyping methods: high quality single-nucleotide polymorphism (hqSNP)
Molly M. Leeper (17019252), Eshaw Vidyaprakash (17019258), Taylor Griswold (13411444), Beth M. Tolar (17019255), Kelley B. Hise (17019261), Grant M. Williams (17019264), Sung B. Im (11556712), Heather A. Carleton (11556721), Jessica C. Chen (6167159), Hannes Pouseele (17019267)   +9 more
core   +1 more source

Genetic Diversity of Methicillin‐Resistant Staphylococcus aureus Isolates From Two Tertiary Care Hospitals in Sulaymaniyah, Iraq, Characterized by spa Typing, Coagulase VNTR Sequencing, and REP‐PCR

International Journal of Microbiology, Volume 2026, Issue 1, 2026.
Background Methicillin‐resistant Staphylococcus aureus remains a major cause of health care‐associated infection in high‐risk units such as burn and cancer wards. In settings where advanced genotyping schemes are not routinely available, combining complementary molecular typing methods can improve characterization of genetic diversity for surveillance ...
Alan O. Shwan, Sahand K. Arif, Heide Schatten   +2 more
wiley   +1 more source