Results 11 to 20 of about 155,374 (249)

Genomic plasticity enables phenotypic variation of Pseudomonas syringae pv. tomato DC3000. [PDF]

PLoS ONE, 2014
Whole genome sequencing revealed the presence of a genomic anomaly in the region of 4.7 to 4.9 Mb of the Pseudomonas syringae pv. tomato (Pst) DC3000 genome.
Zhongmeng Bao, Paul V Stodghill, Christopher R Myers, Hanh Lam, Hai-Lei Wei, Suma Chakravarthy, Brian H Kvitko, Alan Collmer, Samuel W Cartinhour, Peter Schweitzer, Bryan Swingle   +10 more
doaj   +1 more source

Does hybridization between divergent progenitors drive whole-genome duplication? [PDF]

, 2009
This is the peer reviewed version of the following article: BUGGS, R. J. A., SOLTIS, P. S. and SOLTIS, D. E. (2009), Does hybridization between divergent progenitors drive whole-genome duplication?.
Buggs, RJA, Soltis, DE, Soltis, PS
core   +1 more source

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications

BMC Genomics, 2012
Background Gene duplication has had a major impact on genome evolution. Localized (or tandem) duplication resulting from unequal crossing over and whole genome duplication are believed to be the two dominant mechanisms contributing to vertebrate genome ...
Lu Jianguo, Peatman Eric, Tang Haibao, Lewis Joshua, Liu Zhanjiang   +4 more
doaj   +1 more source

Gene duplicability of core genes is highly consistent across all angiosperms [PDF]

, 2016
Gene duplication is an important mechanism for adding to genomic novelty. Hence, which genes undergo duplication and are preserved following duplication is an important question. It has been observed that gene duplicability, or the ability of genes to be
De Smet, Riet, Defoort, Jonas, Li, Zhen, Maere, Steven, Tasdighian, Setareh, Van de Peer, Yves   +5 more
core   +4 more sources

WGDTree: a phylogenetic software tool to examine conditional probabilities of retention following whole genome duplication events

BMC Bioinformatics, 2022
Background Multiple processes impact the probability of retention of individual genes following whole genome duplication (WGD) events. In analyzing two consecutive whole genome duplication events that occurred in the lineage leading to Atlantic salmon, a
C. Nicholas Henry, Kathryn Piper, Amanda E. Wilson, John L. Miraszek, Claire S. Probst, Yuying Rong, David A. Liberles   +6 more
doaj   +1 more source

Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication [PDF]

, 2013
Horseshoe crabs are marine arthropods with a fossil record extending back approximately 450 million years. They exhibit remarkable morphological stability over their long evolutionary history, retaining a number of ancestral arthropod traits, and are ...
Brockmann, H Jane, Havlak, Paul, Lv, Jie, Nossa, Carlos, Putnam, Nicholas H, Vincent, Kim, Yue, Jia-Xing   +6 more
core   +2 more sources

WGDdetector: a pipeline for detecting whole genome duplication events using the genome or transcriptome annotations

BMC Bioinformatics, 2019
Background With the availability of well-assembled genomes of a growing number of organisms, identifying the bioinformatic basis of whole genome duplication (WGD) is a growing field of genomics.
Yongzhi Yang, Ying Li, Qiao Chen, Yongshuai Sun, Zhiqiang Lu   +4 more
doaj   +1 more source

Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage. [PDF]

PLoS Biology, 2015
Whole-genome duplications have shaped the genomes of several vertebrate, plant, and fungal lineages. Earlier studies have focused on establishing when these events occurred and on elucidating their functional and evolutionary consequences, but we still ...
Marina Marcet-Houben, Toni Gabaldón
doaj   +1 more source

Molecular cytogenetic differentiation of paralogs of Hox paralogs in duplicated and re-diploidized genome of the North American paddlefish (Polyodon spathula). [PDF]

, 2017
BackgroundAcipenseriformes is a basal lineage of ray-finned fishes and comprise 27 extant species of sturgeons and paddlefishes. They are characterized by several specific genomic features as broad ploidy variation, high chromosome numbers, presence of ...
Amemiya, Chris T, Flajšhans, Martin, Gela, David, Havelka, Miloš, Howell, William Mike, Kořínková, Tereza, Ráb, Petr, Symonová, Radka   +7 more
core   +4 more sources

The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications [PDF]

, 2005
Background: Rice is an important staple food and, with the smallest cereal genome, serves as a reference species for studies on the evolution of cereals and other grasses. Therefore, decoding its entire genome will be a prerequisite for applied and basic
Batra, K., Bera, J., Bhargava, A., Bharti, A. K., Buell, C. R., Cattolico, L., Choisne, N., Collura, K., Couloux, A., Currie, J., D'Hont, A., Dalal, V., de Vazeille, A. R., Demange, N., Dike, S., Dixit, A., Dixit, R., Du, C., Fadrosh, D., Feldblyum, T., Fraser, C., Fuks, G., Gaikwad, K., Gaur, A., Ghaz, I. A., Gupta, V., Haas, B., Hamilton, J., Hsiao, J., Iobst, S., Jiang, J. M., Jin, W. W., Johri, S., Jones, K. M., Kapur, A., Khurana, J. P., Khurana, P., Kim, H. R., Kim, M., Kramer, M., Kudrna, D., Kumar, D., Lewis, M., Lin, H. N., Linton, E., Liu, J., Matsumoto, T., McCombie, W. R., Mendiratta, S. D., Messing, J., Mizuno, H., Mohanty, A., Mohapatra, T., Mueller, C., Namiki, N., Nascimento, L., O'Shaughnessy, A., Orjeda, G., Ouyang, S., Overton, L., Pal, A. K., Pal, S., Palmer, L., Pandit, A., Pelletier, E., Preston, R., Quetier, F., Raghuvanshi, S., Ragiba, M., Rambo, T., Reardon, M., Salanoubat, M., Salzberg, S. L., Samain, S., Sasaki, T., Scarpelli, C., Segurens, B., Sharma, S., Sharma, T. R., Singh, A., Singh, H., Singh, N. K., Singh, P. K., Singhal, V., Spiegel, L., Srivastava, S. K., Stum, D., Sureshbabu, K., Swain, S. C., Tallon, L., Tanyolac, B., Tsitrin, T., Tyagi, A. K., Utterback, T., Van Aken, S., Vij, S., Vuong, H., Vydianathan, R., Wang, A. H., Wang, W. M., Weaver, B., Weissenbach, J., White, O., Wincker, P., Wing, R. A., Wortman, J., Wu, J. Z., Yadav, M., Yu, Y., Yuan, Q. P., Zhu, W., Zismann, V., Zutavern, T.   +112 more
core   +1 more source