Results 21 to 30 of about 157,765 (267)

Whole-Genome Duplication and Plant Macroevolution [PDF]

Trends in Plant Science, 2018
Whole-genome duplication (WGD) is characteristic of almost all fundamental lineages of land plants. Unfortunately, the timings of WGD events are loosely constrained and hypotheses of evolutionary consequence are poorly formulated, making them difficult to test.
Clark, James W., Donoghue, Philip C.J.
openaire   +4 more sources

Subfunctionalization versus neofunctionalization after whole-genome duplication [PDF]

Nature Genetics, 2017
The question of what is the predominant evolutionary fate of genes after duplication events has been hotly debated for decades1,2. Two recently published articles in Nature (Lienet al.3) and Nature Genetics (Braaschet al.4) investigated the regulatory fate of gene duplicates after the salmonid-specific (Ss4R) and teleost specific (Ts3R) whole genome ...
Sandve, Simen R., Rohlfs, Rori V., Hvidsten, Torgeir R.   +2 more
openaire   +3 more sources

Evolution After Whole-Genome Duplication: A Network Perspective [PDF]

G3 Genes|Genomes|Genetics, 2013
AbstractGene duplication plays an important role in the evolution of genomes and interactomes. Elucidating how evolution after gene duplication interplays at the sequence and network level is of great interest. In this work, we analyze a data set of gene pairs that arose through whole-genome duplication (WGD) in yeast.
Zhu, Yun, Lin, Zhenguo, Nakhleh, Luay
openaire   +3 more sources

Novelty and Convergence in Adaptation to Whole Genome Duplication [PDF]

Molecular Biology and Evolution, 2021
AbstractWhole genome duplication (WGD) can promote adaptation but is disruptive to conserved processes, especially meiosis. Studies in Arabidopsis arenosa revealed a coordinated evolutionary response to WGD involving interacting proteins controlling meiotic crossovers, which are minimized in an autotetraploid (within-species polyploid) to avoid ...
Magdalena Bohutínská, Mark Alston, Patrick Monnahan, Terezie Mandáková, Sian Bray, Pirita Paajanen, Filip Kolář, Levi Yant   +7 more
openaire   +5 more sources

Polyploidy in fungi: evolution after whole-genome duplication [PDF]

Proceedings of the Royal Society B: Biological Sciences, 2012
Polyploidy is a major evolutionary process in eukaryotes—particularly in plants and, to a less extent, in animals, wherein several past and recent whole-genome duplication events have been described. Surprisingly, the incidence of polyploidy in other eukaryote kingdoms, particularly within fungi, remained largely disregarded by the scientific community
Albertin, Warren, Marullo, Philippe
openaire   +3 more sources

Differential Retention of Metabolic Genes Following Whole-Genome Duplication [PDF]

Molecular Biology and Evolution, 2009
Classical studies in Metabolic Control Theory have shown that metabolic fluxes usually exhibit little sensitivity to changes in individual enzyme activity, yet remain sensitive to global changes of all enzymes in a pathway. Therefore, little selective pressure is expected on the dosage or expression of individual metabolic genes, yet entire pathways ...
Gout, Jean-François, Duret, Laurent, Kahn, Daniel   +2 more
openaire   +3 more sources

Bacterial microevolution and the Pangenome [PDF]

, 2020
The comparison of multiple genome sequences sampled from a bacterial population reveals considerable diversity in both the core and the accessory parts of the pangenome.
A Bankevich, AE Darling, AE Darling, AJ Page, AO Kislyuk, B Charlesworth, C Buckee, C Collins, C Wiuf, CM Thomas, CS Pepperell, DJ Wilson, DR Zerbino, E Jacox, F Lassalle, GE Sims, GJ Szollosi, GJ Szollosi, GJ Szollosi, H Ochman, IJ Wilson, J Hedge, J Lawrence, JB Joy, JFC Kingman, KAA Jolley, KE Dingle, KT Konstantinidis, L Li, L Petersen, M Csurös, M Nordborg, M Pagel, M Steinegger, M Touchon, M Vos, M Vos, M Vos, MJ Ward, MTG Holden, NA Rosenberg, NJ Croucher, P Donnelly, PAP Moran, R Griffiths, RC Griffiths, RG Everitt, RK Aziz, S Castillo-Ramírez, S Kurtz, S Wright, SF Altschul, SK Sheppard, SK Sheppard, SS Abby, SV Angiuoli, T Ohta, T Seemann, TG Vaughan, WP Maddison, X Didelot, X Didelot, X Didelot, X Didelot, X Didelot, X Didelot, X Didelot, Z Yang, Z Zhou   +68 more
core   +1 more source

Genomic plasticity enables phenotypic variation of Pseudomonas syringae pv. tomato DC3000. [PDF]

PLoS ONE, 2014
Whole genome sequencing revealed the presence of a genomic anomaly in the region of 4.7 to 4.9 Mb of the Pseudomonas syringae pv. tomato (Pst) DC3000 genome.
Zhongmeng Bao, Paul V Stodghill, Christopher R Myers, Hanh Lam, Hai-Lei Wei, Suma Chakravarthy, Brian H Kvitko, Alan Collmer, Samuel W Cartinhour, Peter Schweitzer, Bryan Swingle   +10 more
doaj   +1 more source

Tetraodon genome confirms Takifugu findings : most fish are ancient polyploids [PDF]

, 2004
An evolutionary hypothesis suggested by studies of the genome of the tiger pufferfish Takifugu rubripes has now been confirmed by comparison with the genome of a close relative, the spotted green pufferfish Tetraodon nigroviridis.
Van de Peer, Yves
core   +2 more sources

Profiling of gene duplication patterns of sequenced teleost genomes: evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications

BMC Genomics, 2012
Background Gene duplication has had a major impact on genome evolution. Localized (or tandem) duplication resulting from unequal crossing over and whole genome duplication are believed to be the two dominant mechanisms contributing to vertebrate genome ...
Lu Jianguo, Peatman Eric, Tang Haibao, Lewis Joshua, Liu Zhanjiang   +4 more
doaj   +1 more source