Results 101 to 110 of about 5,043,774 (177)

3D HOP release 4.3

, 2020
New release 3D hop 4.
Consortium 3D SHS Team
core  

Conservatoire National de données 3D

, 2020
" Le Conservatoire National des Données 3D SHS est un environnement de sauvegarde sécurisé pour les données 3D, soutenu par Huma-Num. .
Consortium 3D SHS Team
core  

ARGV: 3D genome structure exploration using augmented reality

BMC Bioinformatics
Over the past two decades, scientists have increasingly realized the importance of the three-dimensional (3D) genome organization in regulating cellular activity.
Chrisostomos Drogaris, Yanlin Zhang, Eric Zhang, Elena Nazarova, Roman Sarrazin-Gendron, Sélik Wilhelm-Landry, Yan Cyr, Jacek Majewski, Mathieu Blanchette, Jérôme Waldispühl   +9 more
doaj   +1 more source

Single-cell dynamics of genome-nucleolus interactions captured by nucleolar laser microdissection (NoLMseq)

Nature Communications
Gene positioning in nuclear space is central to regulation, with repressive chromatin domains often contacting the nuclear lamina or nucleoli. The nucleolus undergoes structural changes in different cellular states, potentially altering genome ...
Kaivalya Walavalkar, Shivani Gupta, Jelena Kresoja-Rakic, Mathieu Raingeval, Chiara Mungo, Philip Rubin, Raffaella Santoro   +6 more
doaj   +1 more source

Can one size fit all? - High-Resolution 3D Genome Spatial Organization Inference with Generalizable Models

Data management plan for the grant, "Can one size fit all? - High-Resolution 3D Genome Spatial Organization Inference with Generalizable Models.
Oluwadare, Oluwatosin
core  

A compendium of chromatin interaction maps in the Giant Panda genome

Communications Biology
Elucidating transcriptional regulatory mechanisms within tissues is essential for both physiological and pathological studies of giant panda. Here, we generate transcriptomic profiles and construct 3D genome maps for nine giant panda tissues.
Pengliang Liu, Jiaman Zhang, Kailai Cai, Juan Wang, Hong Liu, Liang Zhang, Wei Xu, Yuliang Liu, Fujun Shen, Rong Hou, Yan Li   +10 more
doaj   +1 more source

Epstein-Barr virus and host cell 3D genome organization. [PDF]

J Med Virol, 2023
Wang C, Zhao B.
europepmc   +1 more source

Endometrial tumorigenesis involves epigenetic plasticity demarcating non-coding somatic mutations and 3D-genome alterations

Genome Biology
Background The incidence and mortality of endometrial cancer (EC) is on the rise. Eighty-five percent of ECs depend on estrogen receptor alpha (ERα) for proliferation, but little is known about its transcriptional regulation in these tumors.
Sebastian Gregoricchio, Aleksandar Kojic, Marlous Hoogstraat, Karianne Schuurman, Suzan Stelloo, Tesa M. Severson, Tracy A. O’Mara, Marjolein Droog, Abhishek A. Singh, Dylan M. Glubb, Lodewyk F. A. Wessels, Michiel Vermeulen, Flora E. van Leeuwen, Wilbert Zwart   +13 more
doaj   +1 more source

Accelerating 3D genomics data analysis with Microcket

Communications Biology
The three-dimensional (3D) organization of genome is fundamental to cell biology. To explore 3D genome, emerging high-throughput approaches have produced billions of sequencing reads, which is challenging and time-consuming to analyze.
Yu Zhao, Mengqi Yang, Fanglei Gong, Yuqi Pan, Minghui Hu, Qin Peng, Leina Lu, Xiaowen Lyu, Kun Sun   +8 more
doaj   +1 more source

Integrative spatial profiling of 3D genome organization and gene expression in tissue. [PDF]

Cell
Guo P, Cui Y, He J, Waldman AJ, Zhu J, Chen Y, Huang Z, Zhou J, Phillips-Cremins JE, Deng Y.   +9 more
europepmc   +1 more source