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In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization. [PDF]
Oberbeckmann E +3 more
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ChIPr: accurate prediction of cohesin-mediated 3D genome organization from 2D chromatin features. [PDF]
Abbas A +5 more
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Human Body Single-Cell Atlas of 3D Genome Organization and DNA Methylation
Zhou J +28 more
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Understanding 3D Genome Organization by Multidisciplinary Methods [PDF]
Understanding how chromatin is folded in the nucleus is fundamental to understanding its function. Although 3D genome organization has been historically difficult to study owing to a lack of relevant methodologies, major technological breakthroughs in genome-wide mapping of chromatin contacts and advances in imaging technologies in the twenty-first ...
Ivana Jerković, Giacomo Cavalli
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Three-Dimensional Genome Organization in Immune Cell Fate and Function
Immune cell development and activation demand the precise and coordinated control of transcriptional programmes. Three-dimensional (3D) organization of the genome has emerged as an important regulator of chromatin state, transcriptional activity and cell
Ralph Stadhouders +2 more
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Organization and function of the 3D genome
Nature Reviews Genetics, 2016Understanding how chromatin is organized within the nucleus and how this 3D architecture influences gene regulation, cell fate decisions and evolution are major questions in cell biology. Despite spectacular progress in this field, we still know remarkably little about the mechanisms underlying chromatin structure and how it can be established, reset ...
Bonev, B, Cavalli, Giacomo
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The Role of 3D Genome Organization in Development and Cell Differentiation
Nature Reviews Molecular Cell Biology, 2019In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically packaged inside the nucleus. This complex genome organization includes multiscale structural units of chromosome territories, compartments, topologically associating domains, which are often demarcated by architectural proteins such as CTCF and cohesin, and ...
Hui Zheng, Wei Xie
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The 3D organization of the Mammalian Genome
The FASEB Journal, 2016The 3D genome organization plays an essential role in orchestrating the many essential nuclear processes including gene regulation. Great strides have been made recently to characterize the 3D chromatin architecture in mammalian cells, with the development of both technologies for genome‐wide study of chromatin interactions at increasing precision and ...
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