Distances and classification of amino acids for different protein secondary structures [PDF]
PRE 67,051927 (2003), 2002 Window profiles of amino acids in protein sequences are taken as a description of the amino acid environment. The relative entropy or Kullback-Leibler distance derived from profiles is used as a measure of dissimilarity for comparison of amino acids and secondary structure conformations.
arxiv +1 more source
Three classes of tetrahydrobiopterin-dependent enzymes
Pteridines, 2013 Current knowledge distinguishes three classes of tetrahydrobiopterin-dependent enzymes as based on protein sequence similarity. These three protein sequence clusters hydroxylate three types of substrate atoms and use three different forms of iron for ...
Werner Ernst R.
doaj +1 more source
Primary structure and functional expression of a high voltage activated calcium channel from rabbit lung [PDF]
, 1990 The complete amino acid sequence of the receptor for organic calcium channel blockers (CaCB) from rabbit lung has been deduced by cloning and sequence analysis of the cDNA.
Bean +24 more
core +2 more sources
SERS discrimination of single amino acid residue in single peptide by plasmonic nanocavities [PDF]
Angewandte Chemie International Edition, 59, 11423-11431 (2020), 2019 Surface-enhanced Raman spectroscopy (SERS) is a sensitive label-free optical method that can provide fingerprint Raman spectra of biomolecules such as DNA, amino acids and proteins. While SERS of single DNA molecule has been recently demonstrated, Raman analysis of single protein sequence was not possible because the SERS spectra of proteins are ...
arxiv +1 more source
DPST: De Novo Peptide Sequencing with Amino-Acid-Aware Transformers [PDF]
arXiv, 2022 De novo peptide sequencing aims to recover amino acid sequences of a peptide from tandem mass spectrometry (MS) data. Existing approaches for de novo analysis enumerate MS evidence for all amino acid classes during inference. It leads to over-trimming on receptive fields of MS data and restricts MS evidence associated with following undecoded amino ...
arxiv
Isolation and Identification of a Novel Phlebovirus, Hedi Virus, from Sandflies Collected in China
Viruses, 2021 We report the isolation of a newly recognized phlebovirus, Hedi virus (HEDV), from Phlebotomus chinensis sandflies collected in Shanxi Province, China. The virus’ RNA is comprised of three segments.
Ziqian Xu +7 more
doaj +1 more source
Primary structure of rat pancreatic lipase mRNA [PDF]
, 1992 The sequence of a rat pancreatic lipase mRNA was determined. The data have been assigned the following accession number, X61925, in the EMBL data library.
Puigserver, Antoine +1 more
core +1 more source
Identification and Analysis of Novel Amino-Acid Sequence Repeats in Bacillus anthracis str. Ames Proteome Using Computational Tools [PDF]
, 2007 We have identified four repeats and ten domains that are novel in proteins encoded by the Bacillus anthracis str. Ames proteome using automated in silico methods.
Guruprasad, L. +2 more
core +5 more sources
European Journal of Entomology, 2008 Two glutathione S-transferase (GST) cDNAs, GSTD2 and GSTS2, were cloned from the silkworm Bombyx mori. The B. mori GSTD2 (BmGSTD2) gene spans 4371 bp and consists of four introns and five exons that encode 222 amino acid residues.
Zhong Zheng GUI +6 more
doaj +1 more source
Primary structure of a high Mr form of rat atrial natriuretic factor [PDF]
, 1984 During the purification of rat atrial natriuretic factor (ANF), low, intermediate and high Mr forms were observed. In this report we describe the purification and amino acid sequence of a 73 residue peptide containing at its C-terminus the previously ...
Cantin, M. +6 more
core +1 more source