Results 31 to 40 of about 860,088 (184)

noelzach/Oomycete-Amplicon-Seq-Soybean-Rhizosphere: getting zenodo

, 2023
Manuscript about amplicon sequencing of oomycetes from soybean ...
Zachary Noel
core   +1 more source

Development of an amplicon-based sequencing approach in response to the global emergence of mpox.

PLoS Biology, 2023
The 2022 multicountry mpox outbreak concurrent with the ongoing Coronavirus Disease 2019 (COVID-19) pandemic further highlighted the need for genomic surveillance and rapid pathogen whole-genome sequencing.
Nicholas F G Chen, Chrispin Chaguza, Luc Gagne, Matthew Doucette, Sandra Smole, Erika Buzby, Joshua Hall, Stephanie Ash, Rachel Harrington, Seana Cofsky, Selina Clancy, Curtis J Kapsak, Joel Sevinsky, Kevin Libuit, Daniel J Park, Peera Hemarajata, Jacob M Garrigues, Nicole M Green, Sean Sierra-Patev, Kristin Carpenter-Azevedo, Richard C Huard, Claire Pearson, Kutluhan Incekara, Christina Nishimura, Jian Ping Huang, Emily Gagnon, Ethan Reever, Jafar Razeq, Anthony Muyombwe, Vítor Borges, Rita Ferreira, Daniel Sobral, Silvia Duarte, Daniela Santos, Luís Vieira, João Paulo Gomes, Carly Aquino, Isabella M Savino, Karinda Felton, Moneeb Bajwa, Nyjil Hayward, Holly Miller, Allison Naumann, Ria Allman, Neel Greer, Amary Fall, Heba H Mostafa, Martin P McHugh, Daniel M Maloney, Rebecca Dewar, Juliet Kenicer, Abby Parker, Katharine Mathers, Jonathan Wild, Seb Cotton, Kate E Templeton, George Churchwell, Philip A Lee, Maria Pedrosa, Brenna McGruder, Sarah Schmedes, Matthew R Plumb, Xiong Wang, Regina Bones Barcellos, Fernanda M S Godinho, Richard Steiner Salvato, Aimee Ceniseros, Mallery I Breban, Nathan D Grubaugh, Glen R Gallagher, Chantal B F Vogels   +70 more
doaj   +1 more source

Core of the saliva microbiome: an analysis of the MG-RAST data

BMC Oral Health, 2021
Background Oral microbiota is considered as the second most complex in the human body and its dysbiosis can be responsible for oral diseases. Interactions between the microorganism communities and the host allow establishing the microbiological proles ...
Simone G. Oliveira, Rafaela R. Nishiyama, Claudio A. C. Trigo, Ana Luiza Mattos-Guaraldi, Alberto M. R. Dávila, Rodrigo Jardim, Flavio H. B. Aguiar   +6 more
doaj   +1 more source

Sequencing statistics for full-length rRNA amplicon sequencing.

, 2021
Sequencing statistics for full-length rRNA amplicon sequencing.
Belgin Dogan (148469), Shiying Zhang (2813257), Rachel M. Bleich (822389), Jeremy Wang (383590), Sandra Zarmer (3804274), Kenneth W. Simpson (7388261), Janelle C. Arthur (10911444)   +6 more
core   +1 more source

Comprehensive Genome Sequence Analysis of a Breast Cancer Amplicon [PDF]

Genome Research, 2001
Gene amplification occurs in most solid tumors and is associated with poor prognosis. Amplification of 20q13.2 is common to several tumor types including breast cancer. The 1 Mb of sequence spanning the 20q13.2 breast cancer amplicon is one of the most exhaustively studied segments of the human genome.
Collins, Colin, Volik, Stanislav, Kowbel, David, Ginzinger, David, Ylstra, Bauke, Cloutier, Thomas, Hawkins, Trevor, Predki, Paul, Martin, Christopher, Wernick, Meredith, Kuo, Wen Lin, Alberts, Arthur, Gray, Joe W.   +12 more
openaire   +2 more sources

Development of amplicon deep sequencing markers and data analysis pipeline for genotyping multi-clonal malaria infections

BMC Genomics, 2017
Background Amplicon deep sequencing permits sensitive detection of minority clones and improves discriminatory power for genotyping multi-clone Plasmodium falciparum infections.
Anita Lerch, Cristian Koepfli, Natalie E. Hofmann, Camilla Messerli, Stephen Wilcox, Johanna H. Kattenberg, Inoni Betuela, Liam O’Connor, Ivo Mueller, Ingrid Felger   +9 more
doaj   +1 more source

An amplicon-based sequencing approach for the study of aeromycology

Journal of Xenobiotics, 2018
Not available.
Mbareche, Hamza, Veillette, Marc, Bilodeau, Guillaume J., Duchaine, Caroline   +3 more
openaire   +4 more sources

Strategy for Modular Tagged High-Throughput Amplicon Sequencing [PDF]

Applied and Environmental Microbiology, 2011
ABSTRACT The use and validation of a strategy that allows a universal set of bar-coded sequencing primers to be appended to an amplified PCR product is described. The strategy allows a modular approach, in that the same bar code can be used with two or more target-specific primer sets, even simultaneously.
de Carcer, Daniel Aguirre, Denman, Stuart E., McSweeney, Chris, Morrison, Mark   +3 more
openaire   +6 more sources

Multiplex PCR Targeted Amplicon Sequencing (MTA-Seq): Simple, Flexible, and Versatile SNP Genotyping by Highly Multiplexed PCR Amplicon Sequencing

Frontiers in Plant Science, 2018
Next-generation sequencing (NGS) technologies have enabled genome re-sequencing for exploring genome-wide polymorphisms among individuals, as well as targeted re-sequencing for the rapid and simultaneous detection of polymorphisms in genes associated ...
Yoshihiko Onda, Yoshihiko Onda, Kotaro Takahagi, Kotaro Takahagi, Kotaro Takahagi, Minami Shimizu, Komaki Inoue, Keiichi Mochida, Keiichi Mochida, Keiichi Mochida   +9 more
doaj   +1 more source

Study of microbiocenosis of canine dental biofilms

Scientific Reports, 2021
Dental biofilm is a complex microbial community influenced by many exogenous and endogenous factors. Despite long-term studies, its bacterial composition is still not clearly understood.
Jana Kačírová, Aladár Maďari, Rastislav Mucha, Lívia K. Fecskeová, Izabela Mujakic, Michal Koblížek, Radomíra Nemcová, Marián Maďar   +7 more
doaj   +1 more source