Results 51 to 60 of about 574,745 (303)
ChIP-Seq analysis of the recruitment of Nurr1 and histone modifiers to the HIV provirus.
, 2022 Histograms show numbers of sequence reads on the Y axis along the length of the reporter HIV-1 pro-viral genome on the X axis. A, Aligned reporter genome. B, Nurr1 (Santa Cruz Biotech, Cat #sc-81345). C, CoREST (Cell Signaling, Cat #14567.
David Alvarez-Carbonell (3721597) +7 more
core +1 more source
lifei176/ChIP-seq-ATAC-seq: ATAC-seq and ChIP-seq
, 2021 This is first ...
lifei176
core +1 more source
SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis
BMC Bioinformatics, 2018 Background Noises and artifacts may arise in several steps of the next-generation sequencing (NGS) process. Recently, an NGS library preparation method called SMART, or Switching Mechanism At the 5′ end of the RNA Transcript, is introduced to prepare ...
Dejian Zhao, Deyou Zheng
doaj +1 more source
Profiling chromatin regulatory landscape: insights into the development of ChIP-seq and ATAC-seq
Molecular Biomedicine, 2020 Chromatin regulatory landscape plays a critical role in many disease processes and embryo development. Epigenome sequencing technologies such as chromatin immunoprecipitation sequencing (ChIP-seq) and assay for transposase-accessible chromatin with high ...
Shaoqian Ma, Yongyou Zhang
doaj +1 more source
diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates. [PDF]
PLoS ONE, 2013 ChIP-seq is increasingly being used for genome-wide profiling of histone modification marks. It is of particular importance to compare ChIP-seq data of two different conditions, such as disease vs.
Li Shen +5 more
doaj +1 more source
Investigating transcription factor dynamics in health and disease using FRAP
FEBS Letters, EarlyView.FRAP analysis of GFP‐tagged transcription factors reveals how molecular mobility and target engagement change in response to drug treatment. By combining live‐cell imaging, quantitative model fitting, and statistical analysis, this approach uncovers transcription factor dynamics linked to disease mechanisms, providing a powerful framework for ...
Kannan Govindaraj +3 more
wiley +1 more source
ENCODE-DCC/chip-seq-pipeline2: v1.6.0
, 2020 Conda users should update pipeline's environment. However, reinstalling is always recommended since we added GNU utils to the installer. # To update env $ bash scripts/update_conda_env.sh # To re-install env $ bash scripts/uninstall_conda_env.sh $ bash ...
Paul L. Maurizio +4 more
core +1 more source
, 2022 (A) ChIP-seq analysis showing the distribution of ZHX3 around target gene loci in proliferating IMR-90 cells. TSS, transcription start site; TES, transcription end site.
Naoki Tani (504791) +6 more
core +1 more source
RNA‐related functions of BRCA2 in transcription, replication, and genome stability
FEBS Letters, EarlyView.Beyond its role in homologous recombination, BRCA2 regulates R‐loop homeostasis, DNA–RNA hybrid resolution, RNA polymerase II dynamics, and transcriptional activation. Disruption of any of these functions can contribute to genome instability, inflammatory signaling, and tumorigenesis. BRCA2 is a central tumor suppressor protein best known for its roles
Lucia Alvaro‐Aranda +2 more
wiley +1 more source
STAR Protocols, 2020 Summary: Chromatin immunoprecipitation with sequencing (ChIP-seq) has been instrumental in understanding transcription factor (TF) binding during gene regulation.
Martyna Lukoseviciute +6 more
doaj +1 more source