Results 181 to 190 of about 574,745 (303)

Analyzing histone ChIP-seq data with a bin-based probability of being signal. [PDF]

PLoS Comput Biol, 2023
Hecht V, Dong K, Rajesh S, Shpilker P, Wekhande S, Shoresh N.   +5 more
europepmc   +1 more source

Single‐Cell Transcriptomics and Metabolomics Reveal Glutamate Dehydrogenase as a Central Regulator of Nitrogen Metabolic Remodeling During Alkalinity Adaptation in Crustaceans

Advanced Science, EarlyView.
Single‐cell transcriptomics reveals the cellular response of Macrobrachium hainanense to carbonate alkalinity stress. Alkalinity stress impairs branchial ammonia excretion, induces mitochondrial dysfunction, and drives cell‐type‐specific changes in gills and hemocytes.
Yiting Jin, Zhimin Lv, Chao Bian, Qibin Yang, Na Zhou, Jianguang Qin, Shengming Sun   +6 more
wiley   +1 more source

Analysis of Putative CzcR Targets Under Zinc Sufficiency and Zinc Excess Conditions in <i>Pseudomonas aeruginosa</i> Using ChIP-Seq. [PDF]

Microorganisms
Mauffrey F, Ducret V, Milho CG, Perron K.   +3 more
europepmc   +1 more source

Validating a re-implementation of an algorithm to integrate transcriptome and ChIP-seq data. [PDF]

PeerJ, 2023
Ahmed M, Kim DR.
europepmc   +1 more source

ChIP-seq datasets

Datasets for specific TF and histones modification in the developing zebrafish embryo.
openaire   +1 more source

DDX3x Regulates NINJ1 Transcription via Histone Lactylation in Sepsis Associated‐Acute Kidney Injury

Advanced Science, EarlyView.
This study identifies a potential therapeutic approach for sepsis‐associated acute kidney injury (SA‐AKI). We found that during SA‐AKI, reduced expression of DDX3x in renal tubular epithelial cells mediates histone delactylation, which in turn upregulates NINJ1 transcription and triggers tubular cell death. Conversely, Odetiglucan confers protection by
Hongyu Liang, Jihong Jiang, Huanxin Yin, Chunyan Liu, Hongjun Huang, Yan Luo, Minmin Zhu, Qiuyun Wang   +7 more
wiley   +1 more source

CHIP-seq and transcriptomics reveal a new role of circadian-regulated StBBX24 protein in potato reproduction. [PDF]

BMC Plant Biol
Grądzka K, Biegańska M, Koczyk G, Młodzińska A, Pawłowicz I, Kiełbowicz-Matuk A.   +5 more
europepmc   +1 more source

Motif elucidation in ChIP-seq datasets with a knockout control. [PDF]

Bioinform Adv, 2023
Denisko D, Viner C, Hoffman MM.
europepmc   +1 more source

A Rare De Novo Missense Mutation in IFT122 Confers a Genetic Susceptibility Factor of Idiopathic Pediatric Uveitis Via Trio‐based Whole‐Exome Sequencing

Advanced Science, EarlyView.
A rare de novo IFT122‐A773E variant is identified in idiopathic pediatric uveitis and shown to exacerbate retinal inflammation and barrier dysfunction. Mechanistically, the variant enhances IFT43 interaction, elevates calcium signaling, and activates the MEK/ERK/FRA1 axis, revealing a previously unrecognized cilia‐associated pathway that may increase ...
Qian Zhou, Jiaxing Huang, Yilin Wang, Xingran Li, Xianyang Liu, Lingyu Dai, Hongshun Li, Qingfeng Wang, Jiangyi Liu, Guannan Su, Wanyun Zhang, Yang Deng, Qingfeng Cao, Yujie Lai, Xiang Luo, Changwei Huang, Ling Chen, Shengping Hou, Peizeng Yang   +18 more
wiley   +1 more source

Evaluating Reproducibility and Best Practices for Replicate Design in G-Quadruplex ChIP-Seq Studies. [PDF]

Int J Mol Sci
Xiao K, Zhang R, Tu J.
europepmc   +1 more source