Results 11 to 20 of about 52,855 (250)
CBDB: The codon bias database [PDF]
BMC Bioinformatics, 2012 Background In many genomes, a clear preference in the usage of particular codons exists. The mechanisms that induce codon biases remain an open question; studies have attributed codon usage to translational selection, mutational bias and drift ...
Hilterbrand Adam +2 more
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Comprehensive analysis of codon bias in 13 Ganoderma mitochondrial genomes [PDF]
Frontiers in Microbiology, 2023 IntroductionCodon usage bias is a prevalent phenomenon observed across various species and genes. However, the specific attributes of codon usage in the mitochondrial genome of Ganoderma species remain unknown.MethodsIn this study, we investigated the ...
Peng Wu +8 more
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Codon Usage Bias in Phytoplankton [PDF]
Journal of Marine Science and Engineering, 2022 Non-random usage of synonymous codons, known as “codon bias”, has been described in many organisms, from bacteria to Drosophila, but little is known about it in phytoplankton.
Marc Krasovec, Dmitry A. Filatov
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Codon Pair Bias Is a Direct Consequence of Dinucleotide Bias [PDF]
Cell Reports, 2016 Codon pair bias is a remarkably stable characteristic of a species. Although functionally uncharacterized, robust virus attenuation was achieved by recoding of viral proteins using underrepresented codon pairs.
Dusan Kunec, Nikolaus Osterrieder
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Effect of genome composition and codon bias on infectious bronchitis virus evolution and adaptation to target tissues [PDF]
BMC Genomics, 2021 Background Infectious bronchitis virus (IBV) is one of the most relevant viruses affecting the poultry industry, and several studies have investigated the factors involved in its biological cycle and evolution.
Giovanni Franzo +3 more
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Mapping evolutionary paradigm of Oropouche virus driven by dinucleotide bias and context-dependent codon bias [PDF]
VirulenceArthropod-borne viruses (arboviruses) pose significant public health threats, and understanding their evolutionary mechanisms can inform molecular diagnostics and vaccine design.
Xuanye Yang +4 more
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A general model of codon bias due to GC mutational bias.
PLoS ONE, 2010 BackgroundIn spite of extensive research on the effect of mutation and selection on codon usage, a general model of codon usage bias due to mutational bias has been lacking.
Gareth A Palidwor +2 more
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Codon Bias Patterns of E. coli's Interacting Proteins. [PDF]
PLoS ONE, 2015 Synonymous codons, i.e., DNA nucleotide triplets coding for the same amino acid, are used differently across the variety of living organisms. The biological meaning of this phenomenon, known as codon usage bias, is still controversial.
Maddalena Dilucca +4 more
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On ribosome load, codon bias and protein abundance. [PDF]
PLoS ONE, 2012 Different codons encoding the same amino acid are not used equally in protein-coding sequences. In bacteria, there is a bias towards codons with high translation rates.
Stefan Klumpp, Jiajia Dong, Terence Hwa
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Codon bias confers stability to human mRNA s [PDF]
EMBO Reports, 2019 Fabian Hia +2 more
exaly +2 more sources