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Clinical Evaluation of Direct Reverse Transcription PCR for Detection of SARS-CoV-2 Compared to Conventional RT-PCR in Patients with Positive Rapid Antigen Test Results during Circulation of Emerging Viral Variants [PDF]

open access: yesDiagnostics, 2023
The emergence of the Omicron (B.1.1.529) variant of SARS-CoV-2 has precipitated a new global wave of the COVID-19 pandemic. The rapid identification of SARS-CoV-2 infection is imperative for the effective mitigation of transmission. Diagnostic modalities
Ming-Jr Jian   +5 more
doaj   +2 more sources

Inter-Laboratory Comparison of RT-PCR-Based Methods for the Detection of Tomato Brown Rugose Fruit Virus on Tomato

open access: yesPathogens, 2022
In 2020, a test performance study (TPS) for the specific detection of tomato brown rugose fruit virus (ToBRFV) was organized in the frame of the H2020 Valitest project. Since no validated tests were available, all the protocols reported in the literature
Marta Luigi   +7 more
doaj   +1 more source

Studies on the antiviral activity of some herbal plants extract against isolated duck hepatitis virus in infected ducklings. [PDF]

open access: yesBenha Veterinary Medical Journal, 2023
Duck hepatitis virus (DHV) is a fatal, rapid spreading viral infection of young ducklings that causes hepatitis and has a high mortality rate if not managed. In the present work, fifteen previously identifiedDHAV3 isolates using conventional RT-PCR.
Ahmed Mohammed   +3 more
doaj   +1 more source

Validation of real-time polymerase chain reaction versus conventional polymerase chain reaction for diagnosis of brucellosis in cattle sera [PDF]

open access: yesVeterinary World, 2021
Background and Aim: Different polymerase chain reaction (PCR) techniques have and are still being used for the direct detection of Brucella DNA in serum samples of different animal species and humans without being validated or properly validated ...
Nour H. Abdel-Hamid   +5 more
doaj   +1 more source

Performance of Simplexa dengue molecular assay compared to conventional and SYBR green RT-PCR for detection of dengue infection in Indonesia. [PDF]

open access: yesPLoS ONE, 2014
Diagnostic tests based on detection of dengue virus (DENV) genome are available with varying sensitivities and specificities. The Simplexa Dengue assay (Focus Diagnostics) is a newly developed real-time RT-PCR method designed to detect and serotype DENV ...
R Tedjo Sasmono   +7 more
doaj   +1 more source

A sensitive SYBR Green RT-qPCR method for grapevine virus E and its application for virus detection in different grapevine sample types

open access: yesJournal of Integrative Agriculture, 2020
To develop a rapid and high-sensitivity method for detection of grapevine virus E (GVE), a SYBR Green based real-time fluorescence quantitative RT-PCR method (RT-qPCR) was established.
Fang REN   +5 more
doaj   +1 more source

Comparison of 16S rRNA Gene Quantification with Selected Inflammatory Markers and Culture Method in Septic Arthritis

open access: yesJournal of Pure and Applied Microbiology, 2023
This study aims to determine the types of causative organism, the utility of synovial procalcitonin (PCT), C-Reactive Protein (CRP) and bacterial 16S rRNA gene-based RT-PCR and their comparison with conventional culture results in patients with ...
Rana Abdulrahman Hamood Al-Masoodi   +5 more
doaj   +1 more source

A semi-automated, isolation-free, high-throughput SARS-CoV-2 reverse transcriptase (RT) loop-mediated isothermal amplification (LAMP) test

open access: yesScientific Reports, 2021
Shortages of reverse transcriptase (RT)-polymerase chain reaction (PCR) reagents and related equipment during the COVID-19 pandemic have demonstrated the need for alternative, high-throughput methods for severe acute respiratory syndrome coronavirus-2 ...
Jonas Schmidt   +8 more
doaj   +1 more source

Optimization of RT-PCR methods for enterovirus detection in groundwater

open access: yesHeliyon, 2023
Enteroviruses (EVs), which belong to the Picornaviridae family, infect individuals asymptomatically or cause mild symptoms (fever, runny nose, cough, skin rash, sneezing, mouth blister).
Boeun Yoo   +5 more
doaj   +1 more source

Establishment of reverse transcription recombinase–aided amplification-lateral-flow dipstick and real-time fluorescence–based reverse transcription recombinase–aided amplification methods for detection of the Newcastle disease virus in chickens

open access: yesPoultry Science, 2020
Newcastle disease is an acute and highly contagious disease of poultry caused by Newcastle disease virus infection, which does great harm to the poultry industry all over the world.
Wenjing Wang   +6 more
doaj   +1 more source

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