Results 191 to 200 of about 29,893 (236)

Applying the Poincaré Disc Method to Analyze the Hierarchical Structure of TADs in Hi-C Data. [PDF]

Genes (Basel)
Timofeev A, Bratchikov A, Anufriev A.
europepmc   +1 more source

Cumulative transcription factor binding and p300-mediated histone acetylation drive enhancer activation frequency. [PDF]

Nat Genet
Baderna V, Barzaghi G, Kleinendorst R, Chatsirisupachai K, Moniot-Perron L, Doyle C, Schopp M, Hochepied T, Libert C, Odom DT, Zaugg JB, Krebs AR.   +11 more
europepmc   +1 more source

TM-Loop: Transformer multi-omics hierarchical detection of chromatin loop. [PDF]

Sci Rep
Zhai H, Yang H, Hou Z, Liu X, Wang J.
europepmc   +1 more source

dcHiChIP: a comprehensive Nextflow-based pipeline for multiscale analysis of chromatin architecture from HiChIP data. [PDF]

Bioinformatics
Agarwal A, Al Bkhetan Z, Plewczynski D.
europepmc   +1 more source

Cohesin-mediated loop extrusion and enhancer-associated factors additively contribute to <i>Sox2</i> looping with its distal enhancer. [PDF]

Genes Dev
Martinovic M, Flach KD, de Kort MAC, Maresca M, Teunissen H, Liu NQ, Lenstra TL, de Wit E.   +7 more
europepmc   +1 more source

Touched by CTCF.

, 2008
openaire   +1 more source

Guided Electrokinetic Assembly of Functionalized Latex Beads for Fluorescence Signal Enhancement Using AC Electro-Osmosis. [PDF]

Sensors (Basel)
Zhou T, Shin A, Kulinsky L.
europepmc   +1 more source

Protocol for genomic mapping of chromatin targets using high-throughput CUT&RUN. [PDF]

STAR Protoc
Kotapalli V, Iakova P, Lu Y, Jain AK.
europepmc   +1 more source

Role of CTCF in DNA damage response [PDF]

Mutation Research - Reviews in Mutation Research, 2019
CCCTC-binding factor (CTCF) is a highly conserved, ubiquitously expressed zinc finger protein. CTCF is a multifunctional protein, associated with a number of vital cellular processes such as transcriptional activation, repression, insulation, imprinting and genome organization.
Suresh Cuddapah, Vinay Singh Tanwar, Cynthia C José   +2 more
exaly   +3 more sources

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Embryogenesis without CTCF in flies and vertebrates

Nature Structural & Molecular Biology, 2021
CTCF is a conserved DNA- and RNA-binding protein with roles in genome folding and transcriptional regulation. Two recent studies investigated how CTCF knockout perturbs genome biology and derails embryogenesis in zebrafish and Drosophila melanogaster, revealing contrasting effects across species.
Geoffrey Fudenberg, Elphège P. Nora
openaire   +2 more sources