Results 31 to 40 of about 3,767,606 (374)

Completely mitochondrial genome of Neolissochilus heterostomus

Mitochondrial DNA. Part B. Resources, 2021
In this study, we determined the complete mitochondrial genome of Neolissochilus heterostomus. The genome is 16,585 bp in length, including 2 ribosomal RNA genes, 13 proteins-coding genes, 22 transfer RNA genes, and two non-coding control regions ...
Jinghong He, Chenfeng Zhao, Yongyao Guo, Haixia Zhang, Bo Zhao, Zhangjie Chu   +5 more
doaj   +1 more source

Towards precision quantification of contamination in metagenomic sequencing experiments

Microbiome, 2019
Metagenomic next-generation sequencing (mNGS) experiments involving small amounts of nucleic acid input are highly susceptible to erroneous conclusions resulting from unintentional sequencing of occult contaminants, especially those derived from ...
M. S. Zinter, M. Y. Mayday, K. K. Ryckman, L. L. Jelliffe-Pawlowski, J. L. DeRisi   +4 more
doaj   +1 more source

A Deep Learning Model for Predicting DNA N6-Methyladenine (6mA) Sites in Eukaryotes

IEEE Access, 2020
DNA N6-methyladenine (6mA) is an epigenetic modification, which is involved in many biological regulation processes like DNA replication, DNA repair, transcription, and gene expression regulation.
Lokuthota Hewage Roland, Champi Thusangi Wannige   +1 more
doaj   +1 more source

High-Throughput DNA Analysis Platform Based on an Optofluidic Ring Resonator Laser

Applied Sciences, 2022
We demonstrate an optofluidic laser using DNA microdroplets, an intercalating dye, and a glass capillary ring resonator. Only the target DNA emits the laser signal, while the non-target DNA, including those with single-base mismatches, exhibits zero ...
Chan Seok Jun, Wonsuk Lee
doaj   +1 more source

From Nonspecific DNA–Protein Encounter Complexes to the Prediction of DNA–Protein Interactions [PDF]

, 2009
©2009 Gao, Skolnick. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are ...
A Sarai, AV Morozov, BW Matthews, BW Matthews, CG Kalodimos, CH Yan, CO Pabo, E Fraenkel, E Katchalski-Katzir, FK Winkler, H Tjong, I Bonnet, IB Kuznetsov, Ilya Vakser, J Gorman, J Skolnick, J Skolnick, JE Donald, Jeffrey Skolnick, JJ Havranek, JS Lamoureux, JS Lamoureux, M Billeter, M Gao, M van Dijk, MJ Sippl, Mu Gao, N Bhardwaj, NC Horton, NM Luscombe, NP Stanford, O Givaty, P Aloy, P Rotkiewicz, PH von Hippel, R Mendez, R Samudrala, RMA Knegtel, S Ahmad, S Jones, SE Halford, SJ Hubbard, TA Robertson, TW Siggers, W Humphrey, WJ Lane, XJ Lu, Y Zhang, Y Zhang, ZJ Liu   +49 more
core   +4 more sources

An MLSA-based online scheme for the rapid identification of Stenotrophomonas isolates [PDF]

, 2011
An online scheme to assign Stenotrophomonas isolates to genomic groups was developed using the multilocus sequence analysis (MLSA), which is based on the DNA sequencing of selected fragments of the housekeeping genes ATP synthase alpha subunit (atpA ...
Barbosa, Heloiza Ramos, De Vos, Paul, Moreira-Filho, Carlos Alberto, Ramos, Patrícia Locosque, Ribeiro Vasconcelos, Ana Tereza, Swings, Jean, Thompson, Cristiane Carneiro, Thompson, Fabiano Lopes, Van Trappen, Stefanie   +8 more
core   +3 more sources

Delimiting the Origin of a B Chromosome by FISH Mapping, Chromosome Painting and DNA Sequence Analysis in Astyanax paranae (Teleostei, Characiformes)

PLoS ONE, 2014
Supernumerary (B) chromosomes have been shown to contain a wide variety of repetitive sequences. For this reason, fluorescent in situ hybridisation (FISH) is a useful tool for ascertaining the origin of these genomic elements, especially when combined ...
D. M. Silva, J. C. Pansonato-Alves, R. Utsunomia, Cristian Araya-Jaime, Francisco J. Ruiz-Ruano, S. N. Daniel, D. Hashimoto, C. Oliveira, J. Camacho, F. Porto‐Foresti, F. Foresti   +10 more
semanticscholar   +1 more source

A Novel Method for Alignment-free DNA Sequence Similarity Analysis Based on the Characterization of Complex Networks

Evolutionary Bioinformatics, 2016
Determination of sequence similarity is one of the major steps in computational phylogenetic studies. One of the major tasks of computational biologists is to develop novel mathematical descriptors for similarity analysis.
Jie Zhou, Pianyu Zhong, Tinghui Zhang
doaj   +2 more sources

Repression of DNA-binding dependent glucocorticoid receptor-mediated gene expression [PDF]

, 2009
The glucocorticoid receptor (GR) affects the transcription of genes involved in diverse processes, including energy metabolism and the immune response, through DNA-binding dependent and independent mechanisms.
Belitsky, Bolton, De Bosscher, De Bosscher, Dervan, Gigu  re, Heck, Hermoso, Hsu, K. A. Muzikar, Kielkopf, Lampson, Lee, Li, McKay, N. G. Nickols, P. B. Dervan, Pratt, Reichardt, Ren, Spencer, Stockwell, Trauger, Wang, White, Wu, Young   +26 more
core   +2 more sources

Detection and characterization of tomato leaf curl New Delhi virus association with mosaic disease of ivy gourd (Coccinia grandis (L.) Voigt) in North India [PDF]

Archives of Biological Sciences, 2018
Sixteen ivy gourd (Coccinia grandis (L.) Voigt) plant samples showing severe mosaic symptoms were collected from New Delhi and Varanasi (Uttar Pradesh) in India. Begomovirus infection was confirmed by PCR using begomovirusspecific primers.
Venkataravanappa Venkataravanappa, Narasimha Reddy Lakshminarayana Reddy C., Saha Sujoy, Subbanna Shankarappa K., Manem Krishna Reddy   +4 more
doaj   +1 more source