Chromosome-level genome assembly of Fragaria pentaphylla using PacBio and Hi-C technologies
Frontiers in Genetics, 2022 Fragaria pentaphylla, a wild diploid quinquefoliolate species of Fragaria, is native to Southwest China. It has two morphs of red and white fruit color in nature and has characteristics of unique fragrance and resistance, which made it not only a ...
Rui Sun +32 more
doaj +1 more source
Evaluating Computational Gene Ontology Annotations [PDF]
, 2016 ISBN:978-1-4939-3743 ...
Richard J. Roberts +4 more
openaire +4 more sources
GFam: a platform for automatic annotation of gene families [PDF]
Nucleic Acids Research, 2012 We have developed GFam, a platform for automatic annotation of gene/protein families. GFam provides a framework for genome initiatives and model organism resources to build domain-based families, derive meaningful functional labels and offers a seamless approach to propagate functional annotation across periodic genome updates.
Sasidharan, Rajkumar +4 more
openaire +21 more sources
Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. [PDF]
, 2014 The mapping and functional analysis of quantitative traits in Brassica rapa can be greatly improved with the availability of physically positioned, gene-based genetic markers and accurate genome annotation.
Covington, Michael F +4 more
core +1 more source
Journal of Fungi, 2023 Black spot needle blight is a serious conifer disease of Pinus sylvestris var. mongolica occurring in Northeast China, which is usually caused by the plant pathogenic fungus Pestalotiopsis neglecta. From the diseased pine needles collected in Honghuaerji,
Jing Yang +5 more
doaj +1 more source
The disease and gene annotations (DGA): an annotation resource for human disease [PDF]
Nucleic Acids Research, 2012 Disease and Gene Annotations database (DGA, http://dga.nubic.northwestern.edu) is a collaborative effort aiming to provide a comprehensive and integrative annotation of the human genes in disease network context by integrating computable controlled vocabulary of the Disease Ontology (DO version 3 revision 2510, which has 8043 inherited, developmental ...
Simon M. Lin +13 more
openaire +2 more sources
htsint: a Python library for sequencing pipelines that combines data through gene set generation [PDF]
, 2015 Background: Sequencing technologies provide a wealth of details in terms of genes, expression, splice variants, polymorphisms, and other features. A standard for sequencing analysis pipelines is to put genomic or transcriptomic features into a context of
Bonneaud, Camille +2 more
core +3 more sources
Genomic Prediction of Complex Phenotypes Using Genic Similarity Based Relatedness Matrix
Frontiers in Genetics, 2018 In the last years, a series of methods for genomic prediction (GP) have been established, and the advantages of GP over pedigree best linear unbiased prediction (BLUP) have been reported.
Ning Gao +8 more
doaj +1 more source
Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology
RNA BiologyRegulatory non-coding RNAs (ncRNAs) are increasingly recognized as integral to the control of biological processes. This is often through the targeted regulation of mRNA expression, but this is by no means the only mechanism through which regulatory ...
Giulia Antonazzo +3 more
doaj +1 more source
Bovine Genome Database: supporting community annotation and analysis of the
BMC Genomics, 2010 Background A goal of the Bovine Genome Database (BGD; http://BovineGenome.org) has been to support the Bovine Genome Sequencing and Analysis Consortium (BGSAC) in the annotation and analysis of the bovine genome.
Childs Kevin L +6 more
doaj +1 more source