Results 51 to 60 of about 7,510,778 (382)

Gene coexpression network analysis as a source of functional annotation for rice genes. [PDF]

PLoS ONE, 2011
With the existence of large publicly available plant gene expression data sets, many groups have undertaken data analyses to construct gene coexpression networks and functionally annotate genes.
Kevin L Childs, Rebecca M Davidson, C Robin Buell   +2 more
doaj   +1 more source

The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines

Frontiers in Genetics, 2014
With the advancement of new high throughput sequencing technologies, there has been an increase in the number of genome sequencing projects worldwide, which has yielded complete genome sequences of human, animals and plants.
Gaston K Mazandu, Nicola eMulder
doaj   +1 more source

GenomeGraphs: integrated genomic data visualization with R. [PDF]

, 2009
BackgroundBiological studies involve a growing number of distinct high-throughput experiments to characterize samples of interest. There is a lack of methods to visualize these different genomic datasets in a versatile manner.
Bullard, James, Dudoit, Sandrine, Durinck, Steffen, Spellman, Paul T   +3 more
core   +3 more sources

Gene Mutation Annotation and Pedigree for Pulmonary Arterial Hypertension Patients in Han Chinese Patients

Global Heart, 2021
Background: The etiology of pulmonary arterial hypertension (PAH) in the Han Chinese population is poorly understood. Objectives: The aim of this study was to assess gene variants and associated functional annotations for PAH in Han Chinese patients ...
Mei-Tzu Wang, Ming-Ji Charng, Pei-Ling Chi, Chin-Chang Cheng, Cheng Chung Hung, Wei-Chun Huang   +5 more
doaj   +1 more source

EAnnot: A genome annotation tool using experimental evidence [PDF]

, 2004
The sequence of any genome becomes most useful for biological experimentation when a complete and accurate gene set is available. Gene prediction programs offer an efficient way to generate an automated gene set.
Berkowicz, Nicolas, Ding, Li, Johnson, Mark R., Meyer, Rekha R., Pepin, Kymberlie H., Sabo, Aniko, Shotland, Yoram, Spieth, John, Wilson, Richard K.   +8 more
core   +3 more sources

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Bioinform., 2009
Summary: We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as KEGG/BioCarta pathways and creates a functionally ...
G. Bindea, B. Mlecnik, H. Hackl, P. Charoentong, M. Tosolini, A. Kirilovsky, W. Fridman, F. Pagès, Z. Trajanoski, J. Galon   +9 more
semanticscholar   +1 more source

DeepRibo: a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns

Nucleic Acids Research, 2019
Annotation of gene expression in prokaryotes often finds itself corrected due to small variations of the annotated gene regions observed between different (sub)-species.
Jim Clauwaert, G. Menschaert, W. Waegeman   +2 more
semanticscholar   +1 more source

EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome

BMC Genomics, 2007
Background Despite the improvements of tools for automated annotation of genome sequences, manual curation at the structural and functional level can provide an increased level of refinement to genome annotation.
Hamilton John P, Campbell Matthew, Thibaud-Nissen Françoise, Zhu Wei, Buell C   +4 more
doaj   +1 more source

Non‐homology‐based prediction of gene functions in maize (Zea mays ssp. mays)

The Plant Genome, 2020
Advances in genome sequencing and annotation have eased the difficulty of identifying new gene sequences. Predicting the functions of these newly identified genes remains challenging.
Xiuru Dai, Zheng Xu, Zhikai Liang, Xiaoyu Tu, Silin Zhong, James C. Schnable, Pinghua Li   +6 more
doaj   +1 more source

Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. [PDF]

, 2014
The mapping and functional analysis of quantitative traits in Brassica rapa can be greatly improved with the availability of physically positioned, gene-based genetic markers and accurate genome annotation.
Covington, Michael F, Devisetty, Upendra Kumar, Lekkala, Saradadevi, Maloof, Julin N, Tat, An V   +4 more
core   +1 more source