Results 61 to 70 of about 208,264 (275)

A quick guide for student-driven community genome annotation

, 2018
High quality gene models are necessary to expand the molecular and genetic tools available for a target organism, but these are available for only a handful of model organisms that have undergone extensive curation and experimental validation over the ...
Benoit, Joshua B., Brown, Susan J., D'elia, Tom, Flores, Mirella, Hosmani, Prashant S., Miller, Sherry, Mueller, Lukas A., Munoz-Torres, Monica, Saha, Surya, Shippy, Teresa, Wiersma-Koch, Helen   +10 more
core   +2 more sources

Genomic Prediction of Complex Phenotypes Using Genic Similarity Based Relatedness Matrix

Frontiers in Genetics, 2018
In the last years, a series of methods for genomic prediction (GP) have been established, and the advantages of GP over pedigree best linear unbiased prediction (BLUP) have been reported.
Ning Gao, Jinyan Teng, Shaopan Ye, Xiaolong Yuan, Shuwen Huang, Hao Zhang, Xiquan Zhang, Jiaqi Li, Zhe Zhang   +8 more
doaj   +1 more source

Gene and alternative splicing annotation with AIR [PDF]

Genome Research, 2005
Designing effective and accurate tools for identifying the functional and structural elements in a genome remains at the frontier of genome annotation owing to incompleteness and inaccuracy of the data, limitations in the computational models, and shifting paradigms in genomics, such as alternative splicing.
Ian M. Dew, Brian P. Walenz, Liliana Florea, Granger G. Sutton, Alison Yao, Rosane Charlab, Clark M. Mobarry, Valentina Di Francesco, Russell Turner, Peter W. Li, Sorin Istrail, Jason R. Miller, Gennady V. Merkulov, Michael Harris, Zuoming Deng   +14 more
openaire   +3 more sources

Population and species neighbor identity impact trait–trait relationships and plant performance

Population Ecology, EarlyView.
We evaluated how populations and species identity influence plant performance and trait outcomes in mixtures, and assessed trait variation among populations of two forb species native to the western United States (Dieteria canescens and Heterotheca villosa) following three interaction treatments (single‐population monoculture, two‐population mixture ...
Alicia J. Foxx, Florian Fort, Andrea T. Kramer   +2 more
wiley   +1 more source

Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing. [PDF]

, 2014
The mapping and functional analysis of quantitative traits in Brassica rapa can be greatly improved with the availability of physically positioned, gene-based genetic markers and accurate genome annotation.
Covington, Michael F, Devisetty, Upendra Kumar, Lekkala, Saradadevi, Maloof, Julin N, Tat, An V   +4 more
core   +1 more source

Network topology drives population temporal variability in experimental habitat networks

Population Ecology, EarlyView.
Habitat patches connected by dispersal pathways form habitat networks. We explored how network topology affects population outcomes in laboratory experiments using a model species (Daphnia carinata). Central habitat nodes in complex lattice networks exhibited lower temporal variability in population sizes, suggesting they support more stable ...
Yiwen Xu, J. Angus Webb, William D. Bovill, Elise L. King   +3 more
wiley   +1 more source

Maize microarray annotation database

Plant Methods, 2011
Background Microarray technology has matured over the past fifteen years into a cost-effective solution with established data analysis protocols for global gene expression profiling.
Berger Dave K, Myburg Alexander A, Coetzer Nanette   +2 more
doaj   +1 more source

Genomic Sequence, Splicing, and Gene Annotation [PDF]

The American Journal of Human Genetics, 2000
Support by National Institutes of Health grant GM37991-11 is gratefully acknowledged. I thank Doug Black for helpful comments on the manuscript. I thank James Burnette, A. Javier Lopez, and Adrian Krainer for providing information prior to publication.
openaire   +3 more sources

Geographic variation in walking activity in the red flour beetle Tribolium castaneum

Population Ecology, EarlyView.
This study examined whether there is geographic variation in field populations, focusing on the moving activity in the red flour beetle Tribolium castaneum. Results showed significant differences in moving activity among field populations but no correlation with latitude or meteorological factors.
Kentarou Matsumura
wiley   +1 more source

htsint: a Python library for sequencing pipelines that combines data through gene set generation [PDF]

, 2015
Background: Sequencing technologies provide a wealth of details in terms of genes, expression, splice variants, polymorphisms, and other features. A standard for sequencing analysis pipelines is to put genomic or transcriptomic features into a context of
Bonneaud, Camille, Herrel, Anthony, Richards, Adam J   +2 more
core   +3 more sources