Results 51 to 60 of about 10,955,304 (331)

Liftoff: an accurate gene annotation mapping tool

open access: yesbioRxiv, 2020
Improvements in DNA sequencing technology and computational methods have led to a substantial increase in the creation of high-quality genome assemblies of many species.
Alaina Shumate, S. Salzberg
semanticscholar   +1 more source

Integrative annotation of 21,037 human genes validated by full-length cDNA clones [PDF]

open access: yes, 2004
The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein requires knowledge of the function of each gene. Currently, our knowledge in this area is still limited.
Terwilliger Joseph D   +688 more
core   +1 more source

The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines

open access: yesFrontiers in Genetics, 2014
With the advancement of new high throughput sequencing technologies, there has been an increase in the number of genome sequencing projects worldwide, which has yielded complete genome sequences of human, animals and plants.
Gaston K Mazandu, Nicola eMulder
doaj   +1 more source

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana [PDF]

open access: yes, 2007
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates were manually curated.
Hosokawa, S.   +189 more
core   +1 more source

A software framework for microarray and gene expression object model (MAGE-OM) array design annotation [PDF]

open access: yes, 2008
Background The MIAME and MAGE-OM standards defined by the MGED society provide a specification and implementation of a software infrastructure to facilitate the submission and sharing of data from microarray studies via public repositories.
Ivens Alasdair   +6 more
core   +1 more source

Repertoire-wide gene structure analyses: a case study comparing automatically predicted and manually annotated gene models

open access: yesBMC Genomics, 2019
Background The location and modular structure of eukaryotic protein-coding genes in genomic sequences can be automatically predicted by gene annotation algorithms.
Jeanne Wilbrandt   +3 more
doaj   +1 more source

The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes [PDF]

open access: yes, 2005
Overbeek R, Begley T, Butler RM, et al. The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research.
Hanson, Andrew   +50 more
core   +1 more source

COGNATE: comparative gene annotation characterizer

open access: yesBMC Genomics, 2017
Background The comparison of gene and genome structures across species has the potential to reveal major trends of genome evolution. However, such a comparative approach is currently hampered by a lack of standardization (e.g., Elliott TA, Gregory TR ...
Jeanne Wilbrandt   +2 more
doaj   +1 more source

CANT-HYD: A Curated Database of Phylogeny-Derived Hidden Markov Models for Annotation of Marker Genes Involved in Hydrocarbon Degradation

open access: yesFrontiers in Microbiology, 2022
Many pathways for hydrocarbon degradation have been discovered, yet there are no dedicated tools to identify and predict the hydrocarbon degradation potential of microbial genomes and metagenomes.
Varada Khot   +11 more
doaj   +1 more source

On gene ontology and function annotation [PDF]

open access: yesBioinformation, 2006
The effort of function annotation does not merely involve associating a gene with some structured vocabulary that describes action. Rather the details of the actions, the components of the actions, the larger context of the actions are important issues that are of direct relevance, because they help understand the biological system to which the gene ...
openaire   +2 more sources

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