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Dengue Virus Genome Uncoating Requires Ubiquitination [PDF]

open access: yesmBio, 2016
The process of genome release or uncoating after viral entry is one of the least-studied steps in the flavivirus life cycle. Flaviviruses are mainly arthropod-borne viruses, including emerging and reemerging pathogens such as dengue, Zika, and West Nile ...
Laura A. Byk   +5 more
doaj   +8 more sources

The accessibility of the HSV genome during productive infection can vary in different cell types and affect the outcome of infection [PDF]

open access: yesmBio
During productive herpes simplex virus type 1 (HSV-1) infection, the viral genome encounters a number of cellular and viral proteins, such as ICP4, which engage in processes that either attenuate or activate transcription.
Jenna M. Nosek   +2 more
doaj   +2 more sources

Viral Genome Deep Classifier [PDF]

open access: yesIEEE Access, 2019
The task of virus classification into subtypes is an important concern in many categorization studies, e.g., in virology or epidemiology. Therefore, the problem of virus subtyping has been a subject of considerable interest in the last decade.
Anna Fabijanska, Szymon Grabowski
doaj   +2 more sources

Approaches to quantifying hepatitis B virus covalently closed circular DNA [PDF]

open access: yesClinical and Molecular Hepatology, 2022
Chronic hepatitis B is a major cause of liver disease worldwide and is currently incurable. Hepatitis B virus (HBV) covalently closed circular (ccc) DNA is a key form of the virus responsible for its persistence and is the transcriptional template for ...
Henrik Zhang, Thomas Tu
doaj   +1 more source

Expansion of Viral Genomes with Viral Protein Genome Linked Copies

open access: yesSSRN Electronic Journal, 2022
Virus protein-linked genome (VPg) proteins are required for replication. VPgs are duplicated in a subset of RNA viruses however their roles are not fully understood and the extent of viral genomes containing VPg copies has not been investigated in detail.
Reid, Warsaba   +3 more
openaire   +2 more sources

NCBI Viral Genomes Resource [PDF]

open access: yesNucleic Acids Research, 2014
Recent technological innovations have ignited an explosion in virus genome sequencing that promises to fundamentally alter our understanding of viral biology and profoundly impact public health policy. Yet, any potential benefits from the billowing cloud of next generation sequence data hinge upon well implemented reference resources that facilitate ...
Brister, J. Rodney   +3 more
openaire   +2 more sources

Sherlock Genomes — viral investigator [PDF]

open access: yesNature Reviews Microbiology, 2013
This month's Genome Watch highlights how deep sequencing technologies have vastly reduced the time and prior knowledge needed to generate viral genomes.
Smith, Sarah E., Wash, Rachael S.
openaire   +2 more sources

CRISPR/Cas9 editing of endogenous banana streak virus in the B genome of Musa spp. overcomes a major challenge in banana breeding [PDF]

open access: yes, 2020
Open Access Journal; Published online: 31 Jan 2019Presence of the integrated endogenous banana streak virus (eBSV) in the B genome of plantain (AAB) is a major challenge for breeding and dissemination of hybrids.
Britt, A.   +5 more
core   +1 more source

The Role of the Stem-Loop A RNA Promoter in Flavivirus Replication

open access: yesViruses, 2021
An essential challenge in the lifecycle of RNA viruses is identifying and replicating the viral genome amongst all the RNAs present in the host cell cytoplasm. Yet, how the viral polymerase selectively recognizes and copies the viral RNA genome is poorly
Kyung H. Choi
doaj   +1 more source

Informative Regions In Viral Genomes [PDF]

open access: yesViruses, 2021
Viruses, far from being just parasites affecting hosts’ fitness, are major players in any microbial ecosystem. In spite of their broad abundance, viruses, in particular bacteriophages, remain largely unknown since only about 20% of sequences obtained from viral community DNA surveys could be annotated by comparison with public databases.
Jaime Leonardo Moreno-Gallego   +1 more
openaire   +6 more sources

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