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Improvements in the sequencing and assembly of plant genomes [PDF]
GigaByte, 2021 Advances in DNA sequencing have made it easier to sequence and assemble plant genomes. Here, we extend an earlier study, and compare recent methods for long read sequencing and assembly.
Priyanka Sharma +11 more
doaj +4 more sources
Oxford Nanopore MinION Sequencing and Genome Assembly
Genomics, Proteomics & Bioinformatics, 2016 The revolution of genome sequencing is continuing after the successful second-generation sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by Pacific Biosciences (PacBio), is progressing rapidly, moving from a technology ...
Hengyun Lu +2 more
doaj +5 more sources
Genome Sequencing and Assembly Strategies and a Comparative Analysis of the Genomic Characteristics in Penaeid Shrimp Species [PDF]
Frontiers in Genetics, 2021 Penaeid shrimp (family Penaeidae) represents one of the most economically and ecologically important groups of crustaceans. However, their genome sequencing and assembly have encountered extreme difficulties during the last 20 years. In this study, based
Jianbo Yuan +11 more
doaj +2 more sources
Frontiers in Plant Science, 2022 Most plastid genome sequences are assembled from short-read whole-genome sequencing data, yet the impact that sequencing coverage and the choice of assembly software can have on the accuracy of the resulting assemblies is poorly understood. In this study,
Eka Giorgashvili +6 more
doaj +3 more sources
Sequencing and assembly of the Egyptian buffalo genome. [PDF]
PLoS ONE, 2020 Water buffalo (Bubalus bubalis) is an important source of meat and milk in countries with relatively warm weather. Compared to the cattle genome, a little has been done to reveal its genome structure and genomic traits.
Dina A El-Khishin +6 more
doaj +5 more sources
Genome Sequencing and Assembly by Long Reads in Plants. [PDF]
Genes (Basel), 2017 Plant genomes generated by Sanger and Next Generation Sequencing (NGS) have provided insight into species diversity and evolution. However, Sanger sequencing is limited in its applications due to high cost, labor intensity, and low throughput, while NGS reads are too short to resolve abundant repeats and polyploidy, leading to incomplete or ambiguous ...
Li C, Lin F, An D, Wang W, Huang R.
europepmc +4 more sources
Long walk to genomics: History and current approaches to genome sequencing and assembly [PDF]
Computational and Structural Biotechnology Journal, 2020 Guido Gallo +2 more
exaly +2 more sources
A practical comparison of the next-generation sequencing platform and assemblers using yeast genome
Life Science Alliance, 2023 This research analyzes the general and optimal de novo yeast assembly pipeline using the repetitive yeast genome assembly by benchmarking four different sequencing platforms and seven assembly programs.
Min-Seung Jeon +5 more
doaj +1 more source
On the sequencing and assembly of the human genome [PDF]
Proceedings of the National Academy of Sciences, 2002 On June 26, 2000, Celera Genomics and the International Human Genome Sequencing Consortium (HGSC) announced at the White House the completion of the first assembly of the human genome and the completion of a rough draft, respectively. In February of 2001, the two teams simultaneously published their analyses of the genome sequences generated (1, 2 ...
Eugene W, Myers +4 more
openaire +2 more sources
Genome Sequence and Assembly of Bos indicus [PDF]
Journal of Heredity, 2012 Cattle are divided into 2 groups referred to as taurine and indicine, both of which have been under strong artificial selection due to their importance for human nutrition. A side effect of this domestication includes a loss of genetic diversity within each specialized breed.
Canavez, Flavio C. +10 more
openaire +6 more sources