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Improvements in the sequencing and assembly of plant genomes [PDF]
GigaByte, 2021 Advances in DNA sequencing have made it easier to sequence and assemble plant genomes. Here, we extend an earlier study, and compare recent methods for long read sequencing and assembly.
Priyanka Sharma +11 more
doaj +4 more sources
Sequencing and assembly of the Egyptian buffalo genome. [PDF]
PLoS ONE, 2020 Water buffalo (Bubalus bubalis) is an important source of meat and milk in countries with relatively warm weather. Compared to the cattle genome, a little has been done to reveal its genome structure and genomic traits.
Dina A El-Khishin +6 more
doaj +5 more sources
Frontiers in Cellular and Infection Microbiology, 2020 Whole genome sequencing has become a powerful tool in modern microbiology. Especially bacterial genomes are sequenced in high numbers. Whole genome sequencing is not only used in research projects, but also in surveillance projects and outbreak ...
Bo Segerman, Bo Segerman
doaj +3 more sources
Oxford Nanopore MinION Sequencing and Genome Assembly
Genomics, Proteomics & Bioinformatics, 2016 The revolution of genome sequencing is continuing after the successful second-generation sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by Pacific Biosciences (PacBio), is progressing rapidly, moving from a technology ...
Hengyun Lu +2 more
doaj +3 more sources
Next-Generation Sequencing and Large Genome Assemblies [PDF]
Pharmacogenomics, 2012 The next-generation sequencing (NGS) revolution has drastically reduced time and cost requirements for sequencing of large genomes, and also qualitatively changed the problem of assembly. This article reviews the state of the art in de novo genome assembly, paying particular attention to mammalian-sized genomes. The strengths and weaknesses of the main
Zemin Ning, German Tischler
exaly +3 more sources
A practical comparison of the next-generation sequencing platform and assemblers using yeast genome
Life Science Alliance, 2023 This research analyzes the general and optimal de novo yeast assembly pipeline using the repetitive yeast genome assembly by benchmarking four different sequencing platforms and seven assembly programs.
Min-Seung Jeon +5 more
doaj +1 more source
On the sequencing and assembly of the human genome [PDF]
Proceedings of the National Academy of Sciences, 2002 On June 26, 2000, Celera Genomics and the International Human Genome Sequencing Consortium (HGSC) announced at the White House the completion of the first assembly of the human genome and the completion of a rough draft, respectively. In February of 2001, the two teams simultaneously published their analyses of the genome sequences generated (1, 2 ...
Eugene W, Myers +4 more
openaire +2 more sources
Genome Sequence and Assembly of Bos indicus [PDF]
Journal of Heredity, 2012 Cattle are divided into 2 groups referred to as taurine and indicine, both of which have been under strong artificial selection due to their importance for human nutrition. A side effect of this domestication includes a loss of genetic diversity within each specialized breed.
Canavez, Flavio C. +10 more
openaire +6 more sources
Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results. [PDF]
PLoS ONE, 2011 Recent developments in high-throughput sequencing technology have made low-cost sequencing an attractive approach for many genome analysis tasks. Increasing read lengths, improving quality and the production of increasingly larger numbers of usable ...
Niina Haiminen +3 more
doaj +1 more source
Frontiers in Plant Science, 2022 Most plastid genome sequences are assembled from short-read whole-genome sequencing data, yet the impact that sequencing coverage and the choice of assembly software can have on the accuracy of the resulting assemblies is poorly understood. In this study,
Eka Giorgashvili +6 more
doaj +1 more source