Results 1 to 10 of about 306,835 (260)

Oxford Nanopore MinION Sequencing and Genome Assembly

Genomics, Proteomics and Bioinformatics, 2016
Abstract The revolution of genome sequencing is continuing after the successful second-generation sequencing (SGS) technology. The third-generation sequencing (TGS) technology, led by Pacific Biosciences (PacBio), is progressing rapidly, moving from a technology once only capable of providing data for small genome analysis, or for ...
Hengyun Lu, Francesca Giordano, Zemin Ning   +2 more
exaly   +5 more sources

Improvements in the Sequencing and Assembly of Plant Genomes [PDF]

Gigabyte, 2021
Abstract Background Advances in DNA sequencing have reduced the difficulty of sequencing and assembling plant genomes. A range of methods for long read sequencing and assembly have been recently compared and we now extend the earlier study and report a comparison with more recent methods.
Priyanka Sharma, Othman Al-Dossary, Bader Alsubaie, Ibrahim Al-Mssallem, Onkar Nath, Neena Mitter, Gabriel Rodrigues Alves Margarido, Bruce Topp, Valentine Murigneux, Ardashir Kharabian Masouleh, Agnelo Furtado, Robert J. Henry   +11 more
openaire   +5 more sources

Sequencing and assembly of the Egyptian buffalo genome [PDF]

PLOS ONE, 2020
يعد جاموس الماء (بوبالوس بوباليس) مصدرًا مهمًا للحوم والحليب في البلدان ذات الطقس الدافئ نسبيًا. بالمقارنة مع جينوم الماشية، تم القيام بالقليل للكشف عن بنية الجينوم والسمات الجينومية. ويرجع ذلك إلى المضاعفات الناجمة عن حجم الجينوم الكبير، وتعقيد الجينوم، والمحتوى المتكرر العالي.
Dina A. El-Khishin, Amr Ageez, Mohamed E. Saad, Amr Ibrahim, Moustafa Shokrof, L. Hassan, Mohamed Abouelhoda   +6 more
openaire   +5 more sources

Genome Sequencing and Assembly by Long Reads in Plants. [PDF]

Genes (Basel), 2017
Plant genomes generated by Sanger and Next Generation Sequencing (NGS) have provided insight into species diversity and evolution. However, Sanger sequencing is limited in its applications due to high cost, labor intensity, and low throughput, while NGS reads are too short to resolve abundant repeats and polyploidy, leading to incomplete or ambiguous ...
Li C, Lin F, An D, Wang W, Huang R.
europepmc   +4 more sources

Long walk to genomics: History and current approaches to genome sequencing and assembly [PDF]

Computational and Structural Biotechnology Journal, 2020
Guido Roberto Gallo, Luca Gianfranceschi, Giulio Formenti   +2 more
exaly   +2 more sources

Genome Sequencing and Assembly Strategies and a Comparative Analysis of the Genomic Characteristics in Penaeid Shrimp Species. [PDF]

Front Genet, 2021
Penaeid shrimp (family Penaeidae) represents one of the most economically and ecologically important groups of crustaceans. However, their genome sequencing and assembly have encountered extreme difficulties during the last 20 years. In this study, based
Yuan J, Zhang X, Li F, Xiang J.
europepmc   +2 more sources

A practical comparison of the next-generation sequencing platform and assemblers using yeast genome

Life Science Alliance, 2023
This research analyzes the general and optimal de novo yeast assembly pipeline using the repetitive yeast genome assembly by benchmarking four different sequencing platforms and seven assembly programs.
Min-Seung Jeon, Da Min Jeong, Huijeong Doh, Hyun Ah Kang, Hyungtaek Jung, Seong-il Eyun   +5 more
doaj   +1 more source

On the sequencing and assembly of the human genome [PDF]

Proceedings of the National Academy of Sciences, 2002
On June 26, 2000, Celera Genomics and the International Human Genome Sequencing Consortium (HGSC) announced at the White House the completion of the first assembly of the human genome and the completion of a rough draft, respectively. In February of 2001, the two teams simultaneously published their analyses of the genome sequences generated (1, 2 ...
Eugene W, Myers, Granger G, Sutton, Hamilton O, Smith, Mark D, Adams, J Craig, Venter   +4 more
openaire   +2 more sources

Genome Sequence and Assembly of Bos indicus [PDF]

Journal of Heredity, 2012
Cattle are divided into 2 groups referred to as taurine and indicine, both of which have been under strong artificial selection due to their importance for human nutrition. A side effect of this domestication includes a loss of genetic diversity within each specialized breed.
Canavez, Flavio C., Luche, Douglas D., Stothard, Paul, Leite, Katia R. M., Sousa-Canavez, Juliana M., Plastow, Graham, Meidanis, João, Souza, Maria Angélica, Feijao, Pedro, Moore, Steve S., Camara-Lopes, Luiz H.   +10 more
openaire   +6 more sources

Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results. [PDF]

PLoS ONE, 2011
Recent developments in high-throughput sequencing technology have made low-cost sequencing an attractive approach for many genome analysis tasks. Increasing read lengths, improving quality and the production of increasingly larger numbers of usable ...
Niina Haiminen, David N Kuhn, Laxmi Parida, Isidore Rigoutsos   +3 more
doaj   +1 more source