Results 31 to 40 of about 208,098 (169)

Delayed boosting improves human antigen-specific Ig and B cell responses to the RH5.1/AS01B malaria vaccine

JCI Insight, 2023
Modifications to vaccine delivery that increase serum antibody longevity are of great interest for maximizing efficacy. We have previously shown that a delayed fractional (DFx) dosing schedule (0-1-6 month) — using AS01B-adjuvanted RH5.1 malaria antigen —
Carolyn M. Nielsen, Jordan R. Barrett, Christine Davis, Jonathan K. Fallon, Cyndi Goh, Ashlin R. Michell, Catherine Griffin, Andrew Kwok, Carolin Loos, Samuel Darko, Farida Laboune, Mehmet Tekman, Ababacar Diouf, Kazutoyo Miura, Joseph R. Francica, Amy Ransier, Carole A. Long, Sarah E. Silk, Ruth O. Payne, Angela M. Minassian, Douglas A. Lauffenburger, Robert A. Seder, Daniel C. Douek, Galit Alter, Simon J. Draper   +24 more
doaj   +1 more source

iakerman/SNS-seq: SNS-seq analysis pipeline

, 2023
SNS-seq analysis pipeline - please note that depending on your reads, some parameters might need changing. This is published in Akerman et al, Nature Communications, 2020.
Akerman Lab
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RNA-seq analysis reveals significant transcriptome changes in turbot (Scophthalmus maximus) suffering severe enteromyxosis. [PDF]

, 2014
Enteromyxosis caused by the intestinal myxozoan parasite Enteromyxum scophthalmi is a serious threat for turbot (Scophthalmus maximus, L.) aquaculture, causing severe catarrhal enteritis leading to a cachectic syndrome, with no therapeutic options ...
Robledo, Diego, Harrison, Peter W, Harrison, Peter W., Roberto Bermúdez, Ronza, P, Bermúdez, Roberto, Bermúdez Pose, Roberto, Bermúdez, R, Quiroga, MI, Pardo, Belén G, Losada García, Ana Paula, Martínez, P, Quiroga, María Isabel, Diego Robledo, Robledo, D, Sitjà-Bobadilla, Ariadna, Pardo, BG, Martínez Portela, Paulino, Paulino Martínez, Ariadna Sitjà-Bobadilla, Sitjà Bobadilla, Ariadna, Peter W Harrison, Sitjà-Bobadilla, A, Paolo Ronza, Ronza, Paolo, Belén G Pardo, Redondo, María José, Redondo, Mª José, Martínez, Paulino, María Quiroga, Ana Losada, Redondo, MJ, Quiroga Berdeal, María Isabel, María José Redondo, Pardo, Belén G., Losada, Ana Paula, Gómez Pardo, María Belén, Losada, AP, Harrison, PW, Robledo Sánchez, Diego   +39 more
core   +1 more source

merip-seq

, 2023
merip-seq 
Shuyi Mi (15058927)
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Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. [PDF]

, 2013
BACKGROUND: Vitamin D insufficiency has been implicated in autoimmunity. ChIP-seq experiments using immune cell lines have shown that vitamin D receptor (VDR) binding sites are enriched near regions of the genome associated with autoimmune diseases.
Heather Hanwell, Adam E Handel, Giulio Disanto, Gavin Giovannoni, Sandve, GK, Berlanga-Taylor, AJ, Geir K Sandve, Finn Drabløs, Disanto, Giulio, Drabløs, F, Handel, Adam, Giuseppe Gallone, George C Ebers, Ramagopalan, Sreeram V, Ebers, George, Drabløs, Finn, Drablos, F, Hanwell, Heather EC, Antonio J Berlanga-Taylor, Handel, Adam E, Sandve, Geir Kjetil, Ebers, Georg C, Ramagopalan, SV, Hanwell, H, Handel, AE, Price, RN, Sreeram V Ramagopalan, Gallone, G, Ebers, GC, Gallone, Anna, Giovannoni, Gavin, Berlanga-Taylor, Antonio, Giovannoni, G, Price, Richard, Disanto, G   +34 more
core   +1 more source

RNA-seq

, 2023
Quantified RNA-seq results of Arabidopsis (control vs heat).
Hongwoo Lee (14653187)
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Capturing the differences between humoral immunity in the normal and tumor environments from repertoire-seq of B-cell receptors using supervised machine learning

BMC Bioinformatics, 2019
Background The recent success of immunotherapy in treating tumors has attracted increasing interest in research related to the adaptive immune system in the tumor microenvironment.
Hiroki Konishi, Daisuke Komura, Hiroto Katoh, Shinichiro Atsumi, Hirotomo Koda, Asami Yamamoto, Yasuyuki Seto, Masashi Fukayama, Rui Yamaguchi, Seiya Imoto, Shumpei Ishikawa   +10 more
doaj   +1 more source

ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions

, 2011
Background In vivo detection of protein-bound genomic regions can be achieved by combining chromatin-immunoprecipitation with next-generation sequencing technology (ChIP-seq). The large amount of sequence data produced by this method needs to be analyzed
Muino, J.M., Angenent, G.C., Krajewski Pawel, Angenent Gerco C, Roeland CHJ van Ham, Pawel Krajewski, Muiño Jose M, Ham, R.C.H.J., van, Kaufmann, K., van Ham Roeland CHJ, Jose M Muiño, Kaufmann Kerstin, van Ham, R.C.H.J., Krajewski, P., Kerstin Kaufmann, Gerco C Angenent   +15 more
core   +1 more source

PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments.

, 2011
Although several tools for the analysis of ChIP-seq data have been published recently, there is a growing demand, in particular in the plant research community, for computational resources with which such data can be processed, analyzed, stored ...
Muino, J.M., Marlous Hoogstraat, Dijk, A.D.J., van, Roeland C. H. J. van Ham, Ham, R.C.H.J., van, van Dijk, A.D.J., van Ham, R.C.H.J., Jose M. Muiño, Aalt D. J. van Dijk, Hoogstraat, M.   +9 more
core   +1 more source

Table S5. Crosstalks in MSR-seq

, 2022
(A) All analyzed crosstalks of MSR-seq (GSE198441). (B) Significant crosstalks of MSR-seq (GSE198441). (C) tRNA charging of MSR-seq (GSE198441). (D) tRNA modifications of MSR-seq (GSE198441). (E) tRNA abundance of MSR-seq (GSE198441).
Xavier Hernandez Alias (13993371)
core   +1 more source