Results 21 to 30 of about 4,048,456 (298)

Quantitative assessment of insertion sequence impact on bacterial genome architecture

Microbial Genomics, 2016
Insertion sequence (IS) elements are important mediators of genome plasticity and can lead to phenotypic changes with evolutionary significance. In multidrug-resistant Acinetobacter baumannii and Klebsiella pneumoniae, IS elements have contributed ...
M. Adams, B. Bishop, M. Wright
semanticscholar   +1 more source

Matching Sequences under Deletion/Insertion Constraints [PDF]

Proceedings of the National Academy of Sciences, 1972
Given two finite sequences, we wish to find the longest common subsequences satisfying certain deletion/insertion constraints. Consider two successive terms in the desired subsequence. The distance between their positions must be the same in the two original sequences for all but a limited number of such pairs of successive terms.
openaire   +3 more sources

ISQuest: finding insertion sequences in prokaryotic sequence fragment data [PDF]

Bioinformatics, 2015
Abstract Motivation: Insertion sequences (ISs) are transposable elements present in most bacterial and archaeal genomes that play an important role in genomic evolution. The increasing availability of sequenced prokaryotic genomes offers the opportunity to study ISs comprehensively, but development of efficient and accurate tools is ...
Biswas, Abhishek, Gauthier, David T., Ranjan, Desh, Zubair, Mohammad   +3 more
openaire   +3 more sources

Insertion Sequence IS26 Reorganizes Plasmids in Clinically Isolated Multidrug-Resistant Bacteria by Replicative Transposition

mBio, 2015
Carbapenemase-producing Enterobacteriaceae (CPE), which are resistant to most or all known antibiotics, constitute a global threat to public health. Transposable elements are often associated with antibiotic resistance determinants, suggesting a role in ...
Susu He, A. Hickman, A. Varani, P. Siguier, M. Chandler, J. Dekker, F. Dyda   +6 more
semanticscholar   +1 more source

Identification of Genomic Insertion and Flanking Sequence of G2-EPSPS and GAT Transgenes in Soybean Using Whole Genome Sequencing Method

Frontiers in Plant Science, 2016
Molecular characterization of sequence flanking exogenous fragment insertion is essential for safety assessment and labeling of genetically modified organism (GMO).
B. Guo, Yong Guo, Hui-long Hong, L. Qiu
semanticscholar   +1 more source

Multiport network analyzer self-calibration: a new approach and some interesting results [PDF]

, 1997
A new approach to multiport network analyzer calibration is here presented. This solution exploits the redundancy of multiple standards connections in order to perform a multiport self-calibration.
Ferrero, Andrea Pierenrico, Madonna, Gian Luigi, Pisani, Umberto   +2 more
core   +1 more source

Cre reporter strains produced by targeted insertion of EYFP and ECFP into the ROSA26 locus

BMC Developmental Biology, 2001
BackgroundSeveral Cre reporter strains of mice have been described, in which a lacZ gene is turned on in cells expressing Cre recombinase, as well as their daughter cells, following Cre-mediated excision of a loxP-flanked transcriptional "stop" sequence.
S. Srinivas, Tomoko Watanabe, Chyuan-Sheng Lin, C. William, Y. Tanabe, T. Jessell, F. Costantini   +6 more
semanticscholar   +1 more source

cDNA that encodes active agrin [PDF]

, 1992
Agrin is thought to mediate the motor neuron-induced aggregation of AChRs and AChE on the surface of muscle fibers at neuromuscular junctions. We have isolated a cDNA from a chick brain library that, based on sequence homology and expression experiments,
Bolander, Bourgeois, Campanelli, Chi, Dahm, Devereux, Dohrmann, Elliott, Fallon, Feinberg, Gluzman, Godfrey, Godfrey, Godfrey, Gubler, Henikoff, Hunter, Hunter, Kidd, Knust, Lankat-Buttgereit, Luthman, Magill-Solc, Magill-Solc, McMahan, Nitkin, Pearson, Pikkarainen, Pikkarainen, Ranscht, Reist, Rothberg, Ruegg, Rupp, Sambrook, Sanger, Shimasaki, Tabor, Tsim, von Heijne, Wallace, Wallace, Wilson   +42 more
core   +2 more sources

Characteristics of transposable element exonization within human and mouse [PDF]

, 2010
Insertion of transposed elements within mammalian genes is thought to be an important contributor to mammalian evolution and speciation. Insertion of transposed elements into introns can lead to their activation as alternatively spliced cassette exons ...
A Athanasiadis, A Corvelo, A Gerber, A Goren, A Levy, A Magen, A Nekrutenko, A Resch, AFA Smit, Agnes Hotz-Wagenblatt, B Giardine, B Mersch, BR Graveley, Britta Mersch, C Liu, D Karolchik, D Labuda, DD Kim, E Kim, ES Lander, EY Levanon, G Ast, G Lev-Maor, G Lev-Maor, Gil Ast, H Xie, Ilya Ruvinsky, J Hull, J Jurka, J Jurka, JO Kriegs, JO Yang, JP Nemes, K Nakabayashi, KP Kister, L Lin, L Lin, M Amit, M Blow, M Krull, M Moller-Krull, M Roy, M Sironi, M Sironi, MA Batzer, MD Koob, N Gal-Mark, N Gal-Mark, N Sela, NH Gehring, Noa Sela, O Ram, P Deininger, PL Deininger, R Cordaux, R Sorek, R Sorek, R Sorek, RA Gibbs, RE Mills, RH Waterston, RM Kuhn, RT Hillman, S He, S Schwartz, SK Ng, SS Singer, ST Sherry, T Kwan, T Kwan, VV Kapitonov, W Makalowski, WJ Kent, WL Chen, WS Lo, XH Zhang, Y Xing, YF Chang   +77 more
core   +9 more sources

Reconstruction of Sequences Distorted by Two Insertions

IEEE Transactions on Information Theory, 2023
Reconstruction codes are generalizations of error-correcting codes that can correct errors by a given number of noisy reads. The study of such codes was initiated by Levenshtein in 2001 and developed recently due to applications in modern storage devices such as racetrack memories and DNA storage.
Zuo Ye, Xin Liu, Xiande Zhang, Gennian Ge   +3 more
openaire   +2 more sources