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A New Anatomy of Autophagic Clearance: On the Roles of Intrinsic Disorder in the Membrane-Less on Membrane-Encapsulated Mechanism [PDF]

open access: yesMembranes
Autophagy is a carefully regulated catabolic process that utilizes assemblies of specific sets of macromolecules operating at multiple stages of the pathway.
Vladimir N. Uversky   +2 more
doaj   +2 more sources

Protein Condensates and Protein Aggregates: In Vitro, in the Cell, and In Silico

open access: yesFrontiers in Bioscience-Landmark, 2023
Similar to other polypeptides and electrolytes, proteins undergo phase transitions, obeying physicochemical laws. They can undergo liquid-to-gel and liquid-to-liquid phase transitions.
Katja Venko, Eva Žerovnik
doaj   +1 more source

Condensation properties of stress granules and processing bodies are compromised in myotonic dystrophy type 1

open access: yesDisease Models & Mechanisms, 2022
RNA regulation in mammalian cells requires complex physical compartmentalisation, using structures thought to be formed by liquid-liquid phase separation. Disruption of these structures is implicated in numerous degenerative diseases.
Selma Gulyurtlu   +6 more
doaj   +1 more source

A high-throughput method for exploring the parameter space of protein liquid-liquid phase separation

open access: yesCell Reports Physical Science, 2022
Summary: Numerous proteins can undergo liquid-liquid phase separation (LLPS) in various biological processes. However, it remains a challenge to systematically evaluate the LLPS ability of proteins.
Yichen Li, Jinge Gu, Cong Liu, Dan Li
doaj   +1 more source

MERS-CoV nsp1 impairs the cellular metabolic processes by selectively downregulating mRNAs in a novel granules

open access: yesVirulence, 2022
MERS-CoV infection can damage the cellular metabolic processes, but the underlying mechanisms are largely unknown. Through screening, we found non-structural protein 1 (nsp1) of MERS-CoV could inhibit cell viability, cell cycle, and cell migration ...
Zhaoyi Pan   +5 more
doaj   +1 more source

In-Silico Analysis of pH-Dependent Liquid-Liquid Phase Separation in Intrinsically Disordered Proteins

open access: yesBiomolecules, 2022
Intrinsically disordered proteins (IDPs) are essential players in the assembly of biomolecular condensates during liquid–liquid phase separation (LLPS). Disordered regions (IDRs) are significantly exposed to the solvent and, therefore, highly influenced ...
Carlos Pintado-Grima   +2 more
doaj   +1 more source

Phase separations in oncogenesis, tumor progressions and metastasis: a glance from hallmarks of cancer

open access: yesJournal of Hematology & Oncology, 2023
Liquid–liquid phase separation (LLPS) is a novel principle for interpreting precise spatiotemporal coordination in living cells through biomolecular condensate (BMC) formation via dynamic aggregation. LLPS changes individual molecules into membrane-free,
Le-Wei Zheng, Cui-Cui Liu, Ke-Da Yu
doaj   +1 more source

The Crystallization of Active Pharmaceutical Ingredients with Low Melting Points in the Presence of Liquid–Liquid Phase Separation

open access: yesCrystals, 2021
Liquid–liquid phase separation (LLPS) during the crystallization of active pharmaceutical ingredients (APIs) often causes agglomeration and other quality issues in crystal products; thus, it should be avoided if possible.
Wei Han Lin   +3 more
doaj   +1 more source

Study liquid–liquid phase separation with optical microscopy: A methodology review

open access: yesAPL Bioengineering, 2023
Intracellular liquid–liquid phase separation (LLPS) is a critical process involving the dynamic association of biomolecules and the formation of non-membrane compartments, playing a vital role in regulating biomolecular interactions and organelle ...
Xiufeng Zhang   +4 more
doaj   +1 more source

Systematic Analysis of Molecular Characterization and Clinical Relevance of Liquid–Liquid Phase Separation Regulators in Digestive System Neoplasms

open access: yesFrontiers in Cell and Developmental Biology, 2022
Background: The role of liquid–liquid phase separation (LLPS) in cancer has also attracted more and more attention, which is found to affect transcriptional regulation, maintaining genomic stability and signal transduction, and contribute to the ...
Yaxin Zhang   +6 more
doaj   +1 more source

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